Cnas002325.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:2392653-2395752[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.31 12 6.3 0.3 1 14 20 33 20 34 0.92 2 19 0.0032 0.12 12.5 0.5 3 23 205 227 203 227 0.90 3 19 0.079 2.9 8.2 0.1 2 23 254 276 253 276 0.92 4 19 3.6e-06 0.00013 21.8 3.6 1 23 372 394 372 394 0.97 5 19 0.0018 0.067 13.3 1.0 2 23 423 444 422 444 0.96 6 19 7.2e-07 2.7e-05 24.0 1.6 1 23 449 472 449 472 0.96 7 19 0.86 32 4.9 0.0 2 23 505 527 504 527 0.94 8 19 0.00027 0.01 15.9 3.7 3 23 536 556 534 556 0.95 9 19 0.0026 0.097 12.8 1.1 1 23 562 586 562 586 0.97 10 19 0.00041 0.015 15.4 0.3 1 23 622 645 622 645 0.96 11 19 0.0059 0.22 11.7 0.1 2 23 651 675 650 675 0.96 12 19 0.012 0.46 10.7 4.7 2 21 681 700 680 702 0.93 13 19 0.00015 0.0057 16.7 1.6 1 23 710 732 710 732 0.97 14 19 0.11 4.3 7.7 0.3 2 23 737 758 737 758 0.83 15 19 0.03 1.1 9.5 1.1 3 23 766 788 764 788 0.91 16 19 0.00048 0.018 15.1 0.1 1 23 796 818 796 818 0.97 17 19 4.1e-05 0.0015 18.5 3.9 1 23 824 846 824 846 0.98 18 19 0.0029 0.11 12.7 0.7 1 23 852 877 852 877 0.93 19 19 9.3e-06 0.00035 20.5 1.4 1 23 884 907 884 907 0.96
Sequence Information
- Coding Sequence
- ATGAGTCTTGTGATTTCTGCATCATTGCCACAAAATGGTTCAATcgGCAGAGATGTATTCAAGTGTGATATTTGTGCATATGCCTTTCGTACATCAGACGATTCAGAAGACCGAAAAATACATATTCTGCAGCACTTCCAACAGATGTTTTGTACGGTGTGTCAACAAACGTTGATTCGAATCGGTGACACTTGGTACAGCGAACATTCAGGCCATAATTTAGCAAAAACTGAACCAAATATAGACGATTACAATGAACGCAATGCAGAGCCAATGATAATTTCACATGATTTTAACGCAATTAGTTCAAATGATGGTTCAACTAAATGTCGAAATCAAGAAGCGGGAAATGTATCTGATCCAATATTTTGTGCAGCTGATTGCGataacaattcaataaatccCGTTGATGtttttaaagaagaagaagaagaagaagttaCATTTTCCGATTTCATTGAACTTAAACCAGAGGAAATTACTCACAATGAGAGCACACATCAAGACGATTCAAACGAGATTGTTGACAATCAAGTTGAAGAGGATAATGAAGCGAGCGTTGACAATCCGATTGAAAAGGACGTTGATGATACTCGTAATAAGCCATTTGGGTGTGCATCATGTGACAAATCATATGCTACCAGACGCACCCTAATCAATCACATCAACAAATACAATCATAGAATGCCGGAAATGTTTTATACCGCGAAATCATGCAAAAGATACACAAAAAGTAGTGCTACTGAAATTCGAAATTGGAAATGCAAGTATTGCAATGtggattttgaatttgaaatcagTTTGGCCGAGCATATTATCGCTCAGCATAGAAAAAATAGTAAGGTTCCTTCAGTATTGCGAAACAATTCAACGGCAAGTCGTGGTGAGAACACTTTGGAAAAGAATCAAAGTAGTAGAAGTTCAATAAATCCGGAAGATTTATTTAGTGACGATAGTGACGCCAATTCAAATCACGAAGACGAAGATAAAATCGAGACTGAACAGAAAGCAAAAACTGGAGAAAAAAGGTTGATATGTGACGTATGCAATAAAGAGCTATTTTGTCGGACTGGGTTTAAATATCACATGAATCTACATCTTGGGATAAAACCTTACGCTTGCGATCAGTGTGATAAAGCCTTTACAGATAAACGTCATTTAAATAAGCACAAAAAATCCCATTTACCCATCACACACGAGCTAAATGATTACCTTGAGGTGGATGGCGTTAAAACCATCTTAACGGAGCATCAACTCAAGCTTCTCGTTTGTCCTATTTGCAATAAAAGATTCTATACTATATCCGGTCTTAAGTGCCACGTCAAAGTCCATGAAACGCCAAAATTCAAGTGCAAAATATGCGATAAAGTATTCAGCGATGTGAGCAATTACAAACGGCATCGAAGCATATCGCACAAGAACGTTGGCCCGGACGAAAATATGGTACAAGAGGAGGTTAGTATAAGAAGTTATGGTGatgttgttttaaattcaacaattgCCATCGATTGGATATGCGAATATTGTAACggagattttgaatttgagaTTCGATTGGCAAAGCACATAATCAAGGAACACAGCGACGAGAAAACGGAGCATTTATGCAATATTTGTGATTGTAAATTTAGTCAATTAAACAATTTACTTATGCATATGAGGGCACATCCAGAGAGTGTTCAACACAAATGTACATTTGATGGATGCGAACAAGGTTTCGCATACAAATCAAGTCTAATGCTTCACATTGATAAGCATAATCGACTTAACGGTGGCGCCATTCAAAggaaaacacaacaacaactgaCCGACATAACAAAGCACCATGCCACATTCAAATCAACGACCGAAGATACAAGTTTATACACATGCAATATTTGTTCGAAAGAATGTGCGAATCGTACAGGCTTATTGGCTCACATTCAAGGAGTTCATAGCACAATACGAGTGAAATGTCCAGTATCTAATTGCGACAGAATTTTTAAATCGGACGTCGGTCTTACTTGGCACGTAAAAAAAGCACATCCGGATGCAATGAAGATGTGTGACATTTGCAATAGAAGTTTTTGTTCTGAGGAGAAATTGGCGAAGCATCAATTATGCCATAACCGAACGAAGAAAGCATCATTCATTTGTAATGTGTGTGAGAAAGCATTTGCCACAAAGAGTGATTTGCGATGCCATTTGAGTACACACGAGAAACAGGCTGAATGTAATATTTGTGGGGAGAAATTTTCTTCGGTCACTATAATGCTGCAGCATCGTGAACGACATGGTAAGAAAAAAGTCATCACATGCCGATTCAAGGGATGCAATCAAGTATTTGAAAATCGAAGAGAGTTTATTCAACACACGAACCAACATCCAAgcgacgaaaagaaaaaatttatttgcagCTACTGCGGCAAGGCAATGGCAAGCATGTCGTATTTAAGGGATCACATTAACATTCACACAGgcaaaaaaccatttgagtgtaaagaatgcaaaaaatgCTTTGCCAAAACGAATTCGTTGCGCCGTCACCTACTCATTCACACAGGCGAAAAGCCTTATATATGTGATATTGGACATTGTAATCAGGCGTACCGGGACAGTATTGATTTGAAACGACATAAATTTAGCGCTCATAAAATCTATACGAAAAAGCATATTTGTCCAATTTGCAACAAAGTGTTCTCGGAGCGAAAACTGTTGACCAAACACACTTCCACTGTACATTCCAGCACGTCGTTACAGGGTTAA
- Protein Sequence
- MSLVISASLPQNGSIGRDVFKCDICAYAFRTSDDSEDRKIHILQHFQQMFCTVCQQTLIRIGDTWYSEHSGHNLAKTEPNIDDYNERNAEPMIISHDFNAISSNDGSTKCRNQEAGNVSDPIFCAADCDNNSINPVDVFKEEEEEEVTFSDFIELKPEEITHNESTHQDDSNEIVDNQVEEDNEASVDNPIEKDVDDTRNKPFGCASCDKSYATRRTLINHINKYNHRMPEMFYTAKSCKRYTKSSATEIRNWKCKYCNVDFEFEISLAEHIIAQHRKNSKVPSVLRNNSTASRGENTLEKNQSSRSSINPEDLFSDDSDANSNHEDEDKIETEQKAKTGEKRLICDVCNKELFCRTGFKYHMNLHLGIKPYACDQCDKAFTDKRHLNKHKKSHLPITHELNDYLEVDGVKTILTEHQLKLLVCPICNKRFYTISGLKCHVKVHETPKFKCKICDKVFSDVSNYKRHRSISHKNVGPDENMVQEEVSIRSYGDVVLNSTIAIDWICEYCNGDFEFEIRLAKHIIKEHSDEKTEHLCNICDCKFSQLNNLLMHMRAHPESVQHKCTFDGCEQGFAYKSSLMLHIDKHNRLNGGAIQRKTQQQLTDITKHHATFKSTTEDTSLYTCNICSKECANRTGLLAHIQGVHSTIRVKCPVSNCDRIFKSDVGLTWHVKKAHPDAMKMCDICNRSFCSEEKLAKHQLCHNRTKKASFICNVCEKAFATKSDLRCHLSTHEKQAECNICGEKFSSVTIMLQHRERHGKKKVITCRFKGCNQVFENRREFIQHTNQHPSDEKKKFICSYCGKAMASMSYLRDHINIHTGKKPFECKECKKCFAKTNSLRRHLLIHTGEKPYICDIGHCNQAYRDSIDLKRHKFSAHKIYTKKHICPICNKVFSERKLLTKHTSTVHSSTSLQG
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -