Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:10249571-10254791[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 18 0.015 0.57 10.4 1.8 1 23 330 353 330 353 0.97

2 18 0.0022 0.083 13.0 1.4 1 23 361 384 361 384 0.97

3 18 0.54 20 5.5 7.0 1 23 390 412 390 412 0.97

4 18 0.0036 0.13 12.4 1.7 1 23 418 440 418 440 0.98

5 18 0.0027 0.1 12.8 0.5 1 23 446 468 446 468 0.99

6 18 6.8e-06 0.00025 21.0 2.5 1 23 474 497 474 497 0.96

7 18 0.25 9.3 6.6 4.7 3 23 506 526 504 526 0.94

8 18 0.00011 0.004 17.2 0.4 1 23 532 555 532 555 0.96

9 18 8.8e-05 0.0033 17.5 3.2 2 23 770 791 769 791 0.97

10 18 4.3e-05 0.0016 18.4 0.6 1 23 797 819 797 819 0.98

11 18 0.29 11 6.4 1.4 1 23 826 849 826 849 0.91

12 18 3.9e-05 0.0015 18.6 0.2 2 23 858 879 857 879 0.97

13 18 0.00044 0.016 15.3 1.9 1 23 886 908 886 908 0.95

14 18 2.7e-05 0.001 19.0 1.5 1 23 914 936 914 936 0.98

15 18 0.0015 0.055 13.6 0.1 2 23 943 964 942 964 0.97

16 18 3.4e-06 0.00012 21.9 1.1 1 23 970 992 970 992 0.98

17 18 2.9e-05 0.0011 19.0 3.0 3 23 1000 1020 998 1020 0.98

18 18 1.4e-05 0.00054 19.9 0.7 1 23 1026 1049 1026 1049 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	18	0.015	0.57	10.4	1.8	1	23	330	353	330	353	0.97
2	18	0.0022	0.083	13.0	1.4	1	23	361	384	361	384	0.97
3	18	0.54	20	5.5	7.0	1	23	390	412	390	412	0.97
4	18	0.0036	0.13	12.4	1.7	1	23	418	440	418	440	0.98
5	18	0.0027	0.1	12.8	0.5	1	23	446	468	446	468	0.99
6	18	6.8e-06	0.00025	21.0	2.5	1	23	474	497	474	497	0.96
7	18	0.25	9.3	6.6	4.7	3	23	506	526	504	526	0.94
8	18	0.00011	0.004	17.2	0.4	1	23	532	555	532	555	0.96
9	18	8.8e-05	0.0033	17.5	3.2	2	23	770	791	769	791	0.97
10	18	4.3e-05	0.0016	18.4	0.6	1	23	797	819	797	819	0.98
11	18	0.29	11	6.4	1.4	1	23	826	849	826	849	0.91
12	18	3.9e-05	0.0015	18.6	0.2	2	23	858	879	857	879	0.97
13	18	0.00044	0.016	15.3	1.9	1	23	886	908	886	908	0.95
14	18	2.7e-05	0.001	19.0	1.5	1	23	914	936	914	936	0.98
15	18	0.0015	0.055	13.6	0.1	2	23	943	964	942	964	0.97
16	18	3.4e-06	0.00012	21.9	1.1	1	23	970	992	970	992	0.98
17	18	2.9e-05	0.0011	19.0	3.0	3	23	1000	1020	998	1020	0.98
18	18	1.4e-05	0.00054	19.9	0.7	1	23	1026	1049	1026	1049	0.96

Sequence Information

Coding Sequence: ATGATAGTGTACAAAACTCCATCGACAGGTGCATTTCATTATCGGAAACAATTCCATGCAACACAAAAACCACAGAGCGAATGTATTTCTGATTGGTTTAAGCGgcttcaaaattcaattgaaaaatgtgaatttgagCGATTTTCCGATTATATGCTGATTGATAAATTTGTAAGCGGTCTCAATGATAGTGATTTTGACAAGATCTCACAAGTTTCCACTTGGACGACGGAAGAATTGATTTTAGTTGTAATTGgaaatgcacacatttttagaAACCTTTCGATGAATAGTGCGGAAAATAACGACGGCATAGAGATTGTggatattcaaataaaaaatgaaGAAAAAGATGTCGTAACAAATGAAACCGAATACGGATCCTGTCTTGAATTTCAGAATAAAGCGGAATGTGAATCAGATTATCATGAAGATCAATCTATCCAATTTGAGAATAATGAAGATGAATTATTTAccacaaagagagaaaaaacaacagaacCTAATAGCAAGAAGGAGAAAAGgagTCGCCGTGATAACATTGAACGCAATAAAAAGCATATAGAGATGCTAAAACGGACCGGTCGATACGAAGAgtacaaaaggaaaaaagccGAATCGGCCAAAAATAGAcgcatgaaaacaaaacagaatgAACAGTACCTACCGCCAGAATTGCAATTGCATTTAATAAACGAGCGTCGACGAGCTACGCGAGAAAGAGTTAAACGTTGGCGAGATCGGAAATCACAAAAACCGACAGATAGAAATTACATTGCTTGCGATGAAAGAATTCAAACTGAAATTGTGATGATTGATGAAGCAATTGAAACCGAAGACCGGGGATATGACGAAGGTGATAGAACAAAAGTGTCAATCGATGAAAGTTCCCTTTTGATATCGATCGATGCGAAACGTTGCCTTCGAAAATATATGGAAACGAAAGCGgtaaaatcgaaacgaaaatatcaaaaaccgaataaagagtttgaatgttatttgtgtTTGCTGAAATGTAGACGATTGTATGAACTACGAGCACATATAAATGTATACCATCCAGTAGAAAAACGGGAAGTTTTCAATTGTCCACAGTGCACAAAAACCACCATCAGCCGAGAGGTGCTCAGTAGACATTTAAAAAAGtATCATGGCACCATCAAAATGCACAAATGTCCCTGTTGCGATGAGGAATTTTCAAAGCGTGGTCTCTTGCACGATCATTTACATATGCATCCTGATTATCGGCCGTTCATCTGTGAAACGTGTGGCAATGGATATAAAACAATCAACGAGCTCAATTCACACCACCGCAAACATTCCGGAATTAAAGAATTCCAATGTGGTGTATGCAACATGTTGCTGGTCTCACGATCATCTTATCGAAGTCATATGTTGACGCACACCGGTGAAAAACCGTATCCCTGTTCATTATGCCACAAAAAATTTCGTCAACTTTCAAGTTTGCGCAAACATCTGATCTCAATACATAATCAAGGTGAAAAACCGCACCTGTGTACTACATGCATGAAACGATTCTCATCCATATATCACTTGAGAATTCATAATAATGTGCATACTGGCGCTCGTCCATATAAATGCTTGAGGTGCGATAGTACATTTAGTCAGCCGTCTGCATTAAAAGCGCATACCGATCGAATCcatgaaaagaaacaacaaattttattcaacaataaattcaatatgcCTGAATATAAAACACCGTCCATTTCAGCCATTCTTCatcgaaaatcatttcatgcaaatcaaaaacaacaatatgaAACGATAGAAGAATGGTTTCAACGAGTGTTTGAATCAGTAGGACGTTGTGATTATGGACAACTGTCCGATTTCATGCTAATCGATAAGTTTATAACGGGTTTGGATGcagaaatattcaataatttggaattgaatgcaatattAACGGTTGACAAGCTGCTTCCAACTGTATTCGGGTTACTTCCAAATTTATATGAGGTTGACAGCGGTgaagaaaaatttataatatcaCATCAGGTTCATGAAAATCATTCAGCTGTTGAAGGAGACGATACTTTTTCCAAAAACGATGGAAACGCACACACTGAATTTTATGACATCAATAACTGCGATCGAGCGGAATTGTCAAATattgatgtgaaaattgagaattttGAGGAGCCAGATGAAATAAGCCATTtagaaaatacaaatcaagaaTCATCTCCAGTTGACCTAATAGCCATCACTAAACCTAGCAGTGCTTATCGCGtaccaaaaacacaaatcaaagGTTTTAAACGAGTAAAAAACCAGGGAATCGTTTGTCTTGACTGTGATAAGgttttcaaacataaaaacTCATATAATTACCACAAGCGGACGCACACCGGCAATAATTTATACAACTGTAATCAATGTCAAAAGGTCTATGTGAAAGAAGTTCAATTAAAAGCGCATTTGCAAACACATAAATATGACAATAAATCATTCGAATGCTATATTTGCTCAACAAAATACGAACGAATACATGGACTACggattcattttgtttcgtcACACATCGAGAAAAAAGTTCGAAATCTTAAATGCCCAACGTGTGTTAAAGTGTTCTCGAACCAAAGAGATTTGGATTTacacattaaaattCATCAAGGATTGGTAAAACAGCATAACTGTCagcaatgtgaaaaaaaatttgataaagCATCTCAACTTCGAGAGCATCAAGTGGTTCATTTGGAAACCAccgattttgtgtgtgagatTTGCGGTCGTTTATTCAAGACGAAACAACTGATGAAGAAACATTTACAAAGGCATAACAATGCTTTACATATCAAATGTCCCGAATGTGATAGAGTTCTGGCATCGAAGCAAATACTGAAAATTCATATGCGGCAACACACGGGCGAAAGGCCTTACAGCTGccatttatgtgaaaaaaccTTTGTTACGCAGCCCAGTTTGGCCAAACATGTAAGAGTTCATCGTCAGGAGAAGCCTTACGGTTGTAAAATTTGTAACAAACGATTTGCAACCACTTACCATTTGAAGCTACATCTCAATACCCACACGGGAGCGAAACCATTTGCCTGTAATCAATGCGATAAAGCCTATACACAATCGGGCACGCTTAAACAACATCAATCCAAGGCACATCCAGAAACACACCGATGA
Protein Sequence: MIVYKTPSTGAFHYRKQFHATQKPQSECISDWFKRLQNSIEKCEFERFSDYMLIDKFVSGLNDSDFDKISQVSTWTTEELILVVIGNAHIFRNLSMNSAENNDGIEIVDIQIKNEEKDVVTNETEYGSCLEFQNKAECESDYHEDQSIQFENNEDELFTTKREKTTEPNSKKEKRSRRDNIERNKKHIEMLKRTGRYEEYKRKKAESAKNRRMKTKQNEQYLPPELQLHLINERRRATRERVKRWRDRKSQKPTDRNYIACDERIQTEIVMIDEAIETEDRGYDEGDRTKVSIDESSLLISIDAKRCLRKYMETKAVKSKRKYQKPNKEFECYLCLLKCRRLYELRAHINVYHPVEKREVFNCPQCTKTTISREVLSRHLKKYHGTIKMHKCPCCDEEFSKRGLLHDHLHMHPDYRPFICETCGNGYKTINELNSHHRKHSGIKEFQCGVCNMLLVSRSSYRSHMLTHTGEKPYPCSLCHKKFRQLSSLRKHLISIHNQGEKPHLCTTCMKRFSSIYHLRIHNNVHTGARPYKCLRCDSTFSQPSALKAHTDRIHEKKQQILFNNKFNMPEYKTPSISAILHRKSFHANQKQQYETIEEWFQRVFESVGRCDYGQLSDFMLIDKFITGLDAEIFNNLELNAILTVDKLLPTVFGLLPNLYEVDSGEEKFIISHQVHENHSAVEGDDTFSKNDGNAHTEFYDINNCDRAELSNIDVKIENFEEPDEISHLENTNQESSPVDLIAITKPSSAYRVPKTQIKGFKRVKNQGIVCLDCDKVFKHKNSYNYHKRTHTGNNLYNCNQCQKVYVKEVQLKAHLQTHKYDNKSFECYICSTKYERIHGLRIHFVSSHIEKKVRNLKCPTCVKVFSNQRDLDLHIKIHQGLVKQHNCQQCEKKFDKASQLREHQVVHLETTDFVCEICGRLFKTKQLMKKHLQRHNNALHIKCPECDRVLASKQILKIHMRQHTGERPYSCHLCEKTFVTQPSLAKHVRVHRQEKPYGCKICNKRFATTYHLKLHLNTHTGAKPFACNQCDKAYTQSGTLKQHQSKAHPETHR

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -