Cnas009082.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- -
- Assembly
- GCA_009176525.2
- Location
- NW:126931-131116[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 20 0.00026 0.0098 16.0 0.4 1 23 185 207 185 207 0.98 2 20 0.0021 0.077 13.1 3.7 3 23 215 235 214 235 0.97 3 20 0.0097 0.36 11.0 1.4 2 23 315 336 314 336 0.96 4 20 0.00013 0.0049 16.9 1.6 2 23 343 364 342 364 0.95 5 20 4.7e-05 0.0018 18.3 1.3 1 23 386 408 386 408 0.98 6 20 0.029 1.1 9.5 3.5 1 23 442 464 442 465 0.95 7 20 0.00094 0.035 14.2 1.5 1 23 514 536 514 536 0.98 8 20 2.6e-06 9.6e-05 22.3 4.6 2 23 543 564 542 564 0.97 9 20 0.11 4 7.7 0.3 2 23 570 592 569 592 0.94 10 20 0.013 0.47 10.7 2.0 2 23 618 639 617 639 0.95 11 20 0.43 16 5.8 4.9 1 23 694 717 694 717 0.90 12 20 1.1 41 4.5 2.7 2 21 726 745 725 746 0.94 13 20 0.95 35 4.8 0.1 3 23 757 778 755 778 0.92 14 20 0.00015 0.0057 16.7 1.3 1 23 795 817 795 817 0.97 15 20 3.9e-07 1.4e-05 24.9 0.6 1 23 824 846 824 846 0.98 16 20 7.4e-08 2.8e-06 27.1 2.6 3 23 861 881 859 881 0.96 17 20 0.075 2.8 8.2 2.5 1 23 887 911 887 911 0.94 18 20 1.9e-07 7.2e-06 25.8 2.5 2 23 918 939 917 939 0.97 19 20 1.2e-06 4.4e-05 23.3 2.0 1 23 945 967 945 967 0.99 20 20 0.0018 0.068 13.3 0.7 5 23 976 996 975 996 0.92
Sequence Information
- Coding Sequence
- ATGTTTGGAACAGATATTCAAACGTGTCGAACATGCCTTGCTCAATTCGACCACAGTCAAATGCTTAGTATTAAACAACAACTAGAATCGGAAAATTTAACAATAGCCGAAATTCTAGTAGAGTGTACAGCTATCAATATACTACCTGACGATGCATTGCCACAaacaatttgttcaaattgcaCAAATAAAGCGCAAGAATCATTCCATTTCAAGAATATGTGCATTGACAGCAATGACAATCTCATGAAACTTATAATCCATGGGGATAGAATTGTAAAAACTGAAAACGACGCTGAAGAAACGGTTATAGTTCCTGAATTGGTCCAAGTGTCCTGTATACAAGATGATTTATTTGACGAGAATGTTGATCACGATAACGataacgatgacgacgacaatttcaattgtaatgATGATATTCATGAAGATACTGGAGGTGAAGGGACCTCCAGCGATGAGTCACAGAAATCAtgtcaaaaatcaaaagaaacaCATGAATTGGATGAAGATTTTCAACTGGTTAATCGTGCTCAACGGATTAATAACAGATATCAATGTGAACTTTGCGACAAATCGCTGGCCGATCGAAGAACATTTTTACTACACATCAGACTTCACTTGggaaaaaatttgaaacactgTAACATATGTGATCGTGGATTTGCCAAACAAAACCATCTGGATCGTCATAAGGCAACAcatgaaaaatcaacgaaaaataaagttttgcGAAAAACCAATATTGCAAAACCAAGGAATACGCAAGTATGTACATCAAAAACTGTACTTGAAGAATTCAATGAGGATGAACGAGGTGAgaacacaacaaaaactacGGTCGATAATAATTCCAactcaacaaaatcaattaataCAGCATCGATTGATGATGAAGAGCTACAATTGATAAATTCtgcaaaagaaataaatggcCGATTACAATGTCCAATTTGCTTTAAAACATTGTCGCATCgtaaaattttaaaacttcATATTCGGGGGCACGTTGGTAAAAATCTTTTGCATTGTAAATATTGTAATCGTGGATTTGCAAAGGGTTCGAACTTAAACAGGCATATACTTCTTCACCGAAAAATCGATAGTGATGAAGAGGACAGGTTTATTAAGAACGCAACATGCTTGGATGGAAGATTTATTTGTTCTTATTGTAATAAAACATTAATTGACCGGCAATCGTTTCGCATTCATATTCGAACACATATCATTTCGAAAGTTTTTATTCGATGTGAAATTTGTAACCGCGGTGGTTTTGAAAGTGACATTGAGCTGCAGGAGCATATGACTTGTCATGGAGATGAATTTTCATGCAATCGATGTgacattattttcaaaacctataacgagagaaaaattcatttaaaaaaccACCATGAAACGGACGAAACTGCACATAATTCAGcggaaaaaagagaatcgcCCATGAAGAAACGTGATGATAATAGCAAAGTCGATGCTAACAATGATGACGATGAGGATAAAGATCTTGtgaatcaatcaaatattgtGAATGGACGATATGAATGCGTATTTTGTAAGAAAACTCTAGCGAATCGAACAACTTTGAAATATCATATCAGACTCCATATTGGAAAGCATTTGCTGAAATGTGACACATGCAACCAAGGTTTTTCCAAGAAAAGCCATTTGAAAAGGCACatgaacacacacatacccaAAAAACAACCATGTCGATACTGTGACGCTACATTTGAGACATATCAAGATCGTAAACTTCATACAGCTACCGTGCATAAGAAAACCGGACAAAATCAGACgaataaaaccaatttaacATCGTGGACTCAACCAAATGGCCACAAAATGTGTCAATGTATGGTGTGCaatttgcaatttgaaaaaatttatgatttaaaaagacatttaaatgaacatgACATTAGCGCTATCGATTATACCAGCCAACatgaaatgcaatcaaaattcgaagaaatttcaaatgtcTATCGCATTAATAATGACTGTGGCTGGGAATTGTCATTAACAGATTCCGAAACCGAAAATGAAGATGAACAAATTGATGGTGTGCAAAATATGCACAAGTGTGAGAAATGTCAGAAAACATTCGATCGAGTATACAAAATAGTTTGCCATATGAAAATTGATCACGCTGTTCATGAATTTCAAgatataaaatgtatgcattGCATGCAATGCTTTCCGAACACAGCATTATTATCAAAGCATAAGCGTCAACAGTgtgaaaatgaacataaacATATTATATGCAACATGTGCAATTCACGATTCTTCTGGGAGTCCAGTTTGGAAAAACATGTAGCAATTTACCACGAAAAGGAAACAAAACATTTCAGTGAATATCAGACCAATTCAAAGTCCTATAATTGTGATCAAtgcacaaaatcattttataaattagaACAATTGGAAGCGCACACAAAACTTCATTTGACACGTGAAAAAACGTTCATTTGCGATGTATGTAATAAAGCATTCAGACGAGCCGACAATCTCAAATCCCATAAGCGTGTGCACATACCACCAGAAAAACGTGAAGTTAAAAATAAGAGACATCTTTGTTCATACTGTGGCAGAAGCTTTTCGAATTCAAGCAATTTAACAGTGCATATTCGACGGCATACTGGCGAACGaccattcatttgtgattttgaatCTTGTAAGGCTCGATTCCCCCGATCATCGGATTTGCAATGTCATCGGCGCACGCATACCGGTGAAAAAACGTGTGTGTGTAATATTTGTGGCAAAGGATTCACAAGATCGAATAAATTAGTTCGCCATATGAGgACCCATACTGGTGAACGGCCATACAAGTGTCCTCACTGTGAACGGGCATTTACGCAATCAAACGACCTAACATTGCATGTGCGGCGACATACTGGCGATCGACCATTTATTTGTGAATGTGGCATGCGTTTCATTACCAATAGCTTATTACAACAACATAGACGGACCACAGGACATATTGATCACACAATCAACTCTTCACATCCACTTCCGACAAACAGCGTGAACAATCCACATCGAACGTTCAACATTCACGATGGAAAACGAACTGGAATTACTGCTACCTTGACTTCATCGAAAGAAGAACTTTTCAATTAG
- Protein Sequence
- MFGTDIQTCRTCLAQFDHSQMLSIKQQLESENLTIAEILVECTAINILPDDALPQTICSNCTNKAQESFHFKNMCIDSNDNLMKLIIHGDRIVKTENDAEETVIVPELVQVSCIQDDLFDENVDHDNDNDDDDNFNCNDDIHEDTGGEGTSSDESQKSCQKSKETHELDEDFQLVNRAQRINNRYQCELCDKSLADRRTFLLHIRLHLGKNLKHCNICDRGFAKQNHLDRHKATHEKSTKNKVLRKTNIAKPRNTQVCTSKTVLEEFNEDERGENTTKTTVDNNSNSTKSINTASIDDEELQLINSAKEINGRLQCPICFKTLSHRKILKLHIRGHVGKNLLHCKYCNRGFAKGSNLNRHILLHRKIDSDEEDRFIKNATCLDGRFICSYCNKTLIDRQSFRIHIRTHIISKVFIRCEICNRGGFESDIELQEHMTCHGDEFSCNRCDIIFKTYNERKIHLKNHHETDETAHNSAEKRESPMKKRDDNSKVDANNDDDEDKDLVNQSNIVNGRYECVFCKKTLANRTTLKYHIRLHIGKHLLKCDTCNQGFSKKSHLKRHMNTHIPKKQPCRYCDATFETYQDRKLHTATVHKKTGQNQTNKTNLTSWTQPNGHKMCQCMVCNLQFEKIYDLKRHLNEHDISAIDYTSQHEMQSKFEEISNVYRINNDCGWELSLTDSETENEDEQIDGVQNMHKCEKCQKTFDRVYKIVCHMKIDHAVHEFQDIKCMHCMQCFPNTALLSKHKRQQCENEHKHIICNMCNSRFFWESSLEKHVAIYHEKETKHFSEYQTNSKSYNCDQCTKSFYKLEQLEAHTKLHLTREKTFICDVCNKAFRRADNLKSHKRVHIPPEKREVKNKRHLCSYCGRSFSNSSNLTVHIRRHTGERPFICDFESCKARFPRSSDLQCHRRTHTGEKTCVCNICGKGFTRSNKLVRHMRTHTGERPYKCPHCERAFTQSNDLTLHVRRHTGDRPFICECGMRFITNSLLQQHRRTTGHIDHTINSSHPLPTNSVNNPHRTFNIHDGKRTGITATLTSSKEELFN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -