Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:6267355-6272641[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 4.6e-05 0.0017 18.3 0.3 1 23 232 254 232 254 0.99

2 11 5.9e-07 2.2e-05 24.3 1.9 1 23 260 282 260 282 0.99

3 11 4.9e-08 1.8e-06 27.7 1.6 1 23 288 310 288 310 0.99

4 11 1.2e-06 4.6e-05 23.3 0.8 1 23 316 338 316 338 0.98

5 11 1.8e-07 6.6e-06 25.9 0.5 1 23 344 366 344 366 0.98

6 11 1.7e-05 0.00063 19.7 2.3 1 23 372 394 372 394 0.99

7 11 2.9e-08 1.1e-06 28.4 0.3 1 23 400 422 400 422 0.99

8 11 8.6e-07 3.2e-05 23.8 0.4 1 23 428 452 428 452 0.96

9 11 4.2e-07 1.5e-05 24.8 4.6 1 23 458 480 458 480 0.97

10 11 3.3e-05 0.0012 18.8 1.0 1 23 493 516 493 516 0.93

11 11 3.2 1.2e+02 3.1 0.1 3 23 529 549 528 549 0.91

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	4.6e-05	0.0017	18.3	0.3	1	23	232	254	232	254	0.99
2	11	5.9e-07	2.2e-05	24.3	1.9	1	23	260	282	260	282	0.99
3	11	4.9e-08	1.8e-06	27.7	1.6	1	23	288	310	288	310	0.99
4	11	1.2e-06	4.6e-05	23.3	0.8	1	23	316	338	316	338	0.98
5	11	1.8e-07	6.6e-06	25.9	0.5	1	23	344	366	344	366	0.98
6	11	1.7e-05	0.00063	19.7	2.3	1	23	372	394	372	394	0.99
7	11	2.9e-08	1.1e-06	28.4	0.3	1	23	400	422	400	422	0.99
8	11	8.6e-07	3.2e-05	23.8	0.4	1	23	428	452	428	452	0.96
9	11	4.2e-07	1.5e-05	24.8	4.6	1	23	458	480	458	480	0.97
10	11	3.3e-05	0.0012	18.8	1.0	1	23	493	516	493	516	0.93
11	11	3.2	1.2e+02	3.1	0.1	3	23	529	549	528	549	0.91

Sequence Information

Coding Sequence: atggcaGTACAAATATCTTCAgcttcaattttcaatggcaACAGCCAAAATATGATGCACCCGTCAGCGCCATCACAATCCTATGAACCGTCAACGAAGCGATTTAAATCGGCTGATCTTACGTTTCAATGCATTGTTTGCAGTGATGTTTCGTTTGACGATCCAAACATATTGTACGAACAcatgaaaattaaacacaaaGAGCTGTACGAACATGACGATGGAAGTGCCGGTGAAAATAGTTTCGATAGTGAGACAGAGCATGAACTGAGCGATGAAGAATATCTCGATCTATCGCGATTGCTGGAACCAATTTGCGAGCTTAAACAAGtggatgatgataatgatgatgacaacgaGAAGAATGTGCTGCAAAATGCCAATTGTCAATCGTCAAATGTCCAATCGATGCAAAATAGTCCATTTGGAATGCCACTGAATGAAGAGCAACTTCGTCTTCagcttcaatttcaattgcagCTACAAAATTACCTCTTACAAATGCAAGCGACAAATACTGAACTCCAACAGCGCAAGAAAAATGGCCATCAAAAACCGAAGGAAAATCGAATTGTTGATAAACCCTTTTCATTACcTCAAGGTCCGGGTCGAGGTCGTCGCCGTGAATTGCCAACGACAAATGGAGCCATTGCTGTGCAATCATCCCCAACACCACCATCCGAATCATGTCTATTTCAATGCACCCAATGCGACAGTTCATTCATATTTGCCGGTGATTTGGCTAAACACGTTCGATCGCACACGAATTTGAAACCGTTTCAGTGTAGCATTTGTCAGAAAAGTTTTACGCACATCGGTAGCTTAAATACTCACATTCGCATTCATAGCGGCGAAAAACCATACAAATGTAAACTGTGTTCGAAAGCTTTTACACAATCGAGCAGTTTAATGGTACATATGCGATCGCATGCAACACGAAAACCCCATCAATGCGAAGTGTGTGAGAAGGGTTTTGTCAATTCGAGTAGTTTAATATTGCACATGAAATCACACACCGAAGGTGATCCATTTCCATGCAATGATTGTGACAAACGTTTCAAATCGGCCACACTATTGGCTGAACATCAACGCACACACACCGACACCTATTTGTATCAATGCTCGATTTGTCGCGAAGCATTCAAACAATCATGCGAATTGGTGCAACACATGAAAAACCATACGGGTGACAAACCATTTCAGTGTAGCATTTGTGAGAAGGCCTTCACTCAACCTGGCagCTTGAACACACACATGCGAATTCATACTGGCGAAAAACCGTTTGcatgcaaacaaaatggatGTGATAAAACATTTACGCAAGCATCAAGTCTTTCGGTGCATATGAAAGTGCATTCGGGTGAAAAACAATATCGATGTCCACATTGTCAAAAATCATACAGTCAACAATCGTATCTCAACAAGCACATGCTCTTCCACAGCGGTAGCACAACGGCAGAAACGGCAGTTGCTGCATACACGTGCAAATGGTGCAACAAACCATTCAACGATTCCGTACAACTCATTCATCATGTAACACAAGAACATGGCAGTTCAAACGGTGGCGCCGGTTCGGTGGCTCAATGCATTATATGCCAGGCAGAATTCACCAGTGCTCCATCtctattatttcatttgcgcGAACACGTCGAGAAAGGTGAACAGGCCAAGCAAtaa
Protein Sequence: MAVQISSASIFNGNSQNMMHPSAPSQSYEPSTKRFKSADLTFQCIVCSDVSFDDPNILYEHMKIKHKELYEHDDGSAGENSFDSETEHELSDEEYLDLSRLLEPICELKQVDDDNDDDNEKNVLQNANCQSSNVQSMQNSPFGMPLNEEQLRLQLQFQLQLQNYLLQMQATNTELQQRKKNGHQKPKENRIVDKPFSLPQGPGRGRRRELPTTNGAIAVQSSPTPPSESCLFQCTQCDSSFIFAGDLAKHVRSHTNLKPFQCSICQKSFTHIGSLNTHIRIHSGEKPYKCKLCSKAFTQSSSLMVHMRSHATRKPHQCEVCEKGFVNSSSLILHMKSHTEGDPFPCNDCDKRFKSATLLAEHQRTHTDTYLYQCSICREAFKQSCELVQHMKNHTGDKPFQCSICEKAFTQPGSLNTHMRIHTGEKPFACKQNGCDKTFTQASSLSVHMKVHSGEKQYRCPHCQKSYSQQSYLNKHMLFHSGSTTAETAVAAYTCKWCNKPFNDSVQLIHHVTQEHGSSNGGAGSVAQCIICQAEFTSAPSLLFHLREHVEKGEQAKQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -