Cnas001498.1
Basic Information
- Insect
- Contarinia nasturtii
- Gene Symbol
- bab2
- Assembly
- GCA_009176525.2
- Location
- NW:2217244-2234198[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 1.7e-09 2.7e-06 26.6 0.0 2 39 374 411 373 415 0.91
Sequence Information
- Coding Sequence
- atgggAAGCGGAGAAGGACAAACGTATTGCTTGCGGTGGAATAACCACAAAgccaatttgattgaaatactTGATGGATTGTTTCAAAAGAAAAGCTACGTCGATTGCACACTTCATGTTGATgacatgaaatttttcgtGCATCGTGTCGTATTAGTGGCCAACTCAACATATTTCCAGACAATTTTACAAGATATGGTCATGGATCATTGTACCATTCTATTTCCGGGCGTATCTGGTTTCGAAATGCAAGCATTGCTCGATTATATGTACACCGGTGAAGTGAATGTGACACAATCACATATACCgcgtttcattcaaattgccGAACAATTGGCAGTTAAAGGTTTATTCGATATGACCGATTTGAAGGATAGATTTAATAAACATAAGGTCGACGAACCCACATATCCGGTTAACTTGGACAGCATGCAAGCATCACAaattaacaacaataaattatcAAACAATCAACAATCGTCACCAATCATTTCACAATCGGCCAATATTTCATCATCCGTACAAAGTAGCACCGGTTCGCCGCCATACAACTACAAATCAAACTACTCTATGTTCGGACCATCATCATCGGACTGCCCACCACCACAATGGCCAATTTCTGCTCTAGCCGCTCCTCTAACACATGCTGGATCAAGTTCTCGTTTCCAAAATGCCGTTACTGCTGCAGCCGCTCTTGGATCCACTTATGAATCTGGCGCTGATATGAACCCATTGAAACGTAAAAAGCTATACAATAGCATGCTTGGTATGTCTCGTGATACATCAATATTACGAAATGTCTTGGCTCAATCAAGTCCAGTCGATTCATCACAACATCCTTCATTACCAGGCACAGACCGTGAACGTGAACGTGAGCGTAGTGATCGCAGCGATCGCAGTGACAGAAGTGACCGAAGTGATCGACACAGCACATACTCAAACGGAACTGACTACTCGGACAAGaaaacaaaatacgGAGAACCACATTCACCATACACTGAAAaattcgatgatgatgaaaatggcCACAATCTAAGCGGAAATGATGCACGTATGGGAAATTATGCTCAAGCTCAAGGAAATCAAAAGCCAGAGTGGAAACGTTACAAGCAATACACACGTCAAGATTTAACTGATGCCATTCAAGCGGTCAAAGGTGGAATGAGTGCATTACAAGCATCGCGTCAATTCAAGGTACCATCAAGAACATTGTACGATAAGGTCAAGAAAATGGGTATAGCTGGTGCGCGTCCAATGAATCGTTCATCAATGAAACGTAGCCCAAGCAATAATGGAAGCCCGGCCGCATTCCCATACGGTATCAGTGGAACACGTAGCCCAATCGCTCACCATTTGGATGGTCAATCACATTTACCGACATTGAATGACAGTGAAAATGGACCTGAAAGCGATCATCGTGAACGTAATTTAATACCAAATTCATTGCATGGTATATTCGATCCGAGTTTATTGCTAAAAGCCATAAGCGAACGTGGTGGTGATCTTGCCAAGAGTGTTGCCAGTCTTGCTGCTGCCAATGGAATCAAAAATATCGGACGACCAATGTCACAATCGCCACCGCCTGGAATTTATGAAGGATCTGCATCAACGGCCACACCAAACTCACCACCACCACGAAATTGTATGCCAgaagatgacgatgatgatgatgatgatgaaacaaAtATGCAAGAAGAAAGTGatcgaaattcatttgtaaaaGCGGAACCATCAACAATGGAAGAAGATGCCGATGACGATCAAGTGGAAGATTTGTCAATGTctcgaaaaagtgaaaaattaagTCCGCCACCATCGCCCGTATCCGTTGCGTCTATACCAAATGCCGATGTAGCCGTACCCGCCGCTCAACCGGGTGTCATCGTACCgccacaaaaataa
- Protein Sequence
- MGSGEGQTYCLRWNNHKANLIEILDGLFQKKSYVDCTLHVDDMKFFVHRVVLVANSTYFQTILQDMVMDHCTILFPGVSGFEMQALLDYMYTGEVNVTQSHIPRFIQIAEQLAVKGLFDMTDLKDRFNKHKVDEPTYPVNLDSMQASQINNNKLSNNQQSSPIISQSANISSSVQSSTGSPPYNYKSNYSMFGPSSSDCPPPQWPISALAAPLTHAGSSSRFQNAVTAAAALGSTYESGADMNPLKRKKLYNSMLGMSRDTSILRNVLAQSSPVDSSQHPSLPGTDRERERERSDRSDRSDRSDRSDRHSTYSNGTDYSDKKTKYGEPHSPYTEKFDDDENGHNLSGNDARMGNYAQAQGNQKPEWKRYKQYTRQDLTDAIQAVKGGMSALQASRQFKVPSRTLYDKVKKMGIAGARPMNRSSMKRSPSNNGSPAAFPYGISGTRSPIAHHLDGQSHLPTLNDSENGPESDHRERNLIPNSLHGIFDPSLLLKAISERGGDLAKSVASLAAANGIKNIGRPMSQSPPPGIYEGSASTATPNSPPPRNCMPEDDDDDDDDETNMQEESDRNSFVKAEPSTMEEDADDDQVEDLSMSRKSEKLSPPPSPVSVASIPNADVAVPAAQPGVIVPPQK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01350619;
- 90% Identity
- iTF_00367330;
- 80% Identity
- iTF_00367330;