Cnas001255.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Contarinia nasturtii
Gene Symbol
lov
Assembly
GCA_009176525.2
Location
NW:747318-873375[+]

Transcription Factor Domain

TF Family
HTH
Domain
HTH_psq domain
PFAM
PF05225
TF Group
Helix-turn-helix
Description
This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 1 3.5e-18 5.4e-15 54.5 0.0 1 44 742 785 742 786 0.96

Sequence Information

Coding Sequence
ATGACAGAACAGGAACATTACAGTTTGCGGTGGAATAATCACCAACATCATATATTGCGTGCATTTGATGCtttgttacaaacaaaatcattggtCGATGTGACATTGGTGTGTGCCGAAACAAGTATATGCGCTCACAAAGTCGTTTTGTCTGCCTGTTcaccattttttcaaaatgtttttgccGAAAATCCGTGCAAGCATCCTGTGATCGTTCTTAAAGATTTTCCCGGTTGGGTGGTTCAGGCcgttgttgattttatgtatCGCGGTGAAATCAGTGTGCCGCAAAAACGTTTAGAAACATTAATTCAAGTGGGTGAATCGTTGCAAATTCGTGGTCTAGTCGAGCATCGTGTTGCTGCTACAAAAGATTTATCTGGTTCATTGAATGAATCGACCGATGATTATTTGGAACCGCAACTATCAAACGATTCCATTGAACCAAAtaattatgatgatgatgatgccaCACCGACTATGGTAAAATCGGTATCGCTTTcaacaaatgcacaaaatggTAAAAAGCATCCGCGTCTATTGAATTCGAATTCATTTAATGACATTTCGGCTGCTTCAATTGCAaacacaacaataacacaaacaAGCCCAACGCTACcgataaacaacaacaacaacagtaacagtAACTGTAGCAGCAACAGTAttagcaacaataacaatcatCAAATTCATCATCAGAATCAGGCAAACGAAAACCGTGATATAGCTTGTACATCACCAATGCCACGACGAAAACAGGCACGTCCACGTCGTCGTTCTGGAGAAGGTGGTCCACATGATTATTCAAGTAAATCGACATCACCAGTAGCAATATGCGCTcccgacgacgatgacgacgacaacaatcCAACTGAAACGGAAACCAACAAAGAACGCATCGAAAATAATAGCAACAGTCACAGCCACATCAACAACATCACCAATACAAACACTATCAGCAGCAGTAGTAGTTGCAATGTCAACGAACAAAGGAAACAATTGGTCAACAAATGCATTGAATCGATGACGGGCACGAATCTAGACACAGACAAAGTGGTCGATTGTACAGTGGCCGCCATTGAGCAATCCATCATTCGCGACAAATTGAATGCGAACGACGACGATATGACGGATAATGAGAtggatgacgatgacgatgaagATAATGATGCGACGGTACATGATATGCGCGTCGTTGATGACATAGAACCAGAGGATGATCTCGATGAAGGTGACGATGaacatgatgaaaaattatcgTTGGAAGGTCGTAAATTGAGAAAGCGAACACATCAATTCTTTTGCGAAGATGATGGTGATTCGAGTGCGCCCGATGATCATGATGATGATATGGACGATGCCGATGGACCCGAAAATTTATGCATCAAAAACACCAGAGATTCAAATACCGAAGGTGttagcaataacaacaacaacaaggaCAACAACTCTAGTAGTAATAGCAACAGCAATAATAACAATCGAATAGGATTAGCGCTCAAGGATATTCGACATTTGAATCGGCCACCATCGCATTGTCGACAACAATTGTTCCCCGGATTTCCGGTCCATCATCACAATCAGAAAGGTGAACATTTGGCAGCACAGTCGCGACAGGAACAATTGCACAAACATGATCAACAACGTCATTCGCAATTGCAACAGGCGGCTGCGGCGGCGGTTGCAGCCGAAAAAGCCTTTATGGAATCACAATCGGAAAATATGAAACGTGAAGCACTTGAATCACgacttgaaaatgaaagtgCATACATGGATCAAATGGATTTAACATTGGTTGCTGCTGCGGCCGCTGCagctcatcatcatcataatgCAGCCAGTATGCATCATCCGAATTCACGGCATCatgaattggaaaataatttgcataaaGAATTTACACCGAGCTCACCGATGAGTCTGCAATCACATTTCAATCCACGTGAGGGTCCACCGCATCCTCCGTCACCATTGCAATTTCCTGGTATGTCATCAGCATTGACATTAACGCCACCGCATCACATGTTTGGTTTAGATTCACCGTTATCACTTTTTCCACCCGGCATGGATCCTGGCAAACTATACAACCCGCTAATGGAAATGCCCGATCCAAGATCGATGCATCCACATCCACATGGTCCATacttgaaaaagaaaaacaagcTGAGCCGACCCAAAGGTCAACATTCAGCGCCACGCGGTGGACCGCCACGTTCATGGACAAATGCTGAATTGACCGAAGCATTGCATCACGTGTGGAATAAGAAAATGACCACGAGCCAAGCATCGCGACTCTTTGGCATACCGTACAATTCATTATTGATGTATGTACGTGGTAAATATGGTAAAAGTTTGAATTTGGAACAATTACGGAAGGGCTGCATCAGTGGTCCACCAATTGAATTGCTGACAATGGGTCTTGGTGCGCACACAAATAACAACGGTGCACCGTCAAAGAGTGGCCTCAGCTCAAGCCGATCTAGTAAAGAGCTTAAagatttggatgaaaatcaAGGTGGTCGAGCAAGTGGTTCAAGTTCAATGAAACGTAGCACACCATCCGAACCTGATTTATTACCAAATCCAAATGCCATGTTCAATCCATTTTCGCCTGGATTTTATCCTGACTTTGCGGCCGGCTTTCCAGGATTACCGCTCAGCATGTTGAATTTATTGCCACCAGAACGGCATCCACCTTCGTTACACGGCATGCAAATCGACGAAGATTGTAAAAGTGATCGCTCAAAACAATCGCTAGAAGATGACTATCCCATACCACAACCATTAGCGCTGAATCGAGACGACAGGCGCGAGCTCATACAGCAAAATGGACAAGATtaa
Protein Sequence
MTEQEHYSLRWNNHQHHILRAFDALLQTKSLVDVTLVCAETSICAHKVVLSACSPFFQNVFAENPCKHPVIVLKDFPGWVVQAVVDFMYRGEISVPQKRLETLIQVGESLQIRGLVEHRVAATKDLSGSLNESTDDYLEPQLSNDSIEPNNYDDDDATPTMVKSVSLSTNAQNGKKHPRLLNSNSFNDISAASIANTTITQTSPTLPINNNNNSNSNCSSNSISNNNNHQIHHQNQANENRDIACTSPMPRRKQARPRRRSGEGGPHDYSSKSTSPVAICAPDDDDDDNNPTETETNKERIENNSNSHSHINNITNTNTISSSSSCNVNEQRKQLVNKCIESMTGTNLDTDKVVDCTVAAIEQSIIRDKLNANDDDMTDNEMDDDDDEDNDATVHDMRVVDDIEPEDDLDEGDDEHDEKLSLEGRKLRKRTHQFFCEDDGDSSAPDDHDDDMDDADGPENLCIKNTRDSNTEGVSNNNNNKDNNSSSNSNSNNNNRIGLALKDIRHLNRPPSHCRQQLFPGFPVHHHNQKGEHLAAQSRQEQLHKHDQQRHSQLQQAAAAAVAAEKAFMESQSENMKREALESRLENESAYMDQMDLTLVAAAAAAAHHHHNAASMHHPNSRHHELENNLHKEFTPSSPMSLQSHFNPREGPPHPPSPLQFPGMSSALTLTPPHHMFGLDSPLSLFPPGMDPGKLYNPLMEMPDPRSMHPHPHGPYLKKKNKLSRPKGQHSAPRGGPPRSWTNAELTEALHHVWNKKMTTSQASRLFGIPYNSLLMYVRGKYGKSLNLEQLRKGCISGPPIELLTMGLGAHTNNNGAPSKSGLSSSRSSKELKDLDENQGGRASGSSSMKRSTPSEPDLLPNPNAMFNPFSPGFYPDFAAGFPGLPLSMLNLLPPERHPPSLHGMQIDEDCKSDRSKQSLEDDYPIPQPLALNRDDRRELIQQNGQD

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00367321;
90% Identity
iTF_00367321;
80% Identity
iTF_00367321;