Basic Information

Insect: Contarinia nasturtii
Gene Symbol: -
Assembly: GCA_009176525.2
Location: NW:2334415-2336125[-]

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 2.8e-09 4.3e-06 26.0 0.0 4 44 255 294 252 295 0.91

2 4 1.3e-08 2.1e-05 23.8 0.0 4 44 304 344 302 345 0.93

3 4 0.0012 1.8 8.0 0.0 24 38 372 386 366 391 0.84

4 4 1.8e-12 2.8e-09 36.2 0.1 5 38 413 445 411 452 0.88

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	2.8e-09	4.3e-06	26.0	0.0	4	44	255	294	252	295	0.91
2	4	1.3e-08	2.1e-05	23.8	0.0	4	44	304	344	302	345	0.93
3	4	0.0012	1.8	8.0	0.0	24	38	372	386	366	391	0.84
4	4	1.8e-12	2.8e-09	36.2	0.1	5	38	413	445	411	452	0.88

Sequence Information

Coding Sequence: ATGGATTCGTCGCCGGCAGTATCACATCGATTCGCATggaacaataaaagtgaaatattaAAACAGCAACATTATTTGTTTGACAATAACTTGGAATATGATTGCATTATAATAACAGCCCAAGGAACTCGAAGTCAAGCGCATCAGGTTGTTCTATCGTCGtcaagtgatttttttcgaaaaatattgagTGAATTACCACCATTGCCCGAACCACCAACCATTTATATACCCGACATCGATTCATGCATACTGGATGCGATActtcgtttcatttatattgGTGAGACCAGCATTGCATCCGAGTATTtaacaacatttttggaattctGTAATTTATTGAGTGTTAAAGGATGTGTTGCAAATGGTTTCATCACACCATTGAATGGGAACGAAGTGAAAACAGTGAataacgaaaaagaaacggatataaatgaaaaattgtactATAATTCAAGTGAAAGTTGTTCGGGTGAAGAATATTTGGAGGTTGAACCAACGCAGAGTGTGAATAGCGAAGAAGATAACACCGAACAAGATTATTTAGAAGAGTATTTGGAAGATGATACGATGTTAATGGATGTAAAAGATGATTCGATATTGATTGAAAGTgaatatgatgaaaatcaacaagttggcgaattcatttcattcgaaattgaaaaaacagaGGAAGACGTTTCAAATGTGTCCAAAGAATGCGGTGgaagcaacaaaaatcaacgGTATGTAAATCGACAAGGTGCACGCAGCACAAGTTCACAAATTGACAAAGCATTGAATGAAGTCACCAATGGCAAAACCATACACCGGCTATCGGTTGAATATAATTTACCAAGATCCACGTTGTATCATCGGTTTCGTAATAgcaaacatttaaaacaaaactatcGACTCGAACGGAAATCGAATTTGGACAGTGCCGTGCAGGCCGTATTGCATGAACGACTAAGTTTGAAAACAGCGGCCGATCGTTTTAAAGTACCAAAAACAGCGATTTGGCGTGAAGTTAGAAAGAATGAACAATATCAACCGTCAACCAAAGAAGTCACCGCTGAAAGACAAAATGCACAACACGAAATTTTGTTGGGGAAAAGTTTGACGAGTATCAGTGCCAAATATGgCATACCATTGACAACATTGCATCGTGACAAGAAAAAACTATCGGTTGAGGGCAAACTTCCGGAATCATTTCGCGTCAAAGATCGTACCGAAAATTCAGAATACGGCCAACGTCTGGAGATGGCCTTGGAGAAATGTCGCAATGGAATGTCACAATATCAAGCTGCAAAACTGTATAACATTCCAAAAGCGACGATGTGGCGATACGCAAATTCACTGAATAAATCCAGCCGGaagagcaaagaaaaacagaatTCCGACAGCACATAA
Protein Sequence: MDSSPAVSHRFAWNNKSEILKQQHYLFDNNLEYDCIIITAQGTRSQAHQVVLSSSSDFFRKILSELPPLPEPPTIYIPDIDSCILDAILRFIYIGETSIASEYLTTFLEFCNLLSVKGCVANGFITPLNGNEVKTVNNEKETDINEKLYYNSSESCSGEEYLEVEPTQSVNSEEDNTEQDYLEEYLEDDTMLMDVKDDSILIESEYDENQQVGEFISFEIEKTEEDVSNVSKECGGSNKNQRYVNRQGARSTSSQIDKALNEVTNGKTIHRLSVEYNLPRSTLYHRFRNSKHLKQNYRLERKSNLDSAVQAVLHERLSLKTAADRFKVPKTAIWREVRKNEQYQPSTKEVTAERQNAQHEILLGKSLTSISAKYGIPLTTLHRDKKKLSVEGKLPESFRVKDRTENSEYGQRLEMALEKCRNGMSQYQAAKLYNIPKATMWRYANSLNKSSRKSKEKQNSDST

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00367417;
90% Identity: iTF_00367417;
80% Identity: iTF_00367417;