Cqua022157.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- RREB1
- Assembly
- GCA_949752815.1
- Location
- OX457081.1:28531742-28538400[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0088 0.91 10.7 0.7 1 21 320 340 320 342 0.95 2 13 0.00036 0.038 15.0 0.2 1 23 352 374 352 374 0.98 3 13 2.5e-05 0.0026 18.6 7.5 1 23 380 402 380 402 0.98 4 13 0.031 3.2 8.9 2.2 2 19 650 667 650 667 0.97 5 13 0.54 56 5.0 0.1 1 23 911 933 911 933 0.97 6 13 2.1e-05 0.0022 18.9 1.2 1 23 943 965 943 965 0.99 7 13 0.0009 0.094 13.8 2.0 1 23 971 994 971 994 0.97 8 13 0.0032 0.34 12.0 2.0 1 23 1352 1375 1352 1375 0.95 9 13 9.4e-05 0.0097 16.9 0.3 2 23 1733 1754 1732 1754 0.97 10 13 0.16 16 6.7 6.3 1 23 1760 1783 1760 1783 0.97 11 13 7 7.3e+02 1.5 5.4 1 23 1879 1902 1879 1902 0.93 12 13 0.0091 0.95 10.6 0.5 3 23 1958 1978 1956 1978 0.96 13 13 0.0015 0.16 13.1 4.8 1 23 1984 2006 1984 2006 0.99
Sequence Information
- Coding Sequence
- ATGATGAAGACAGCTAccgccgcagccgcagccgcagccgcagccgcacaacacaaacaacaactactcacagacaacaacaaacacgcTGCATCACTCTCCCCGGTGAAAATGGAACGTCGCAATTCCACCACGTCCGAGTCCTCTCTGGAGCATCTAGATCTGGGCCGCACACCGAAGAAGCTGAGCGCGCTGCTCTCCTCCGTCACATCAACCCCGCACataaacagcagcagcggcagcagcggcagccaGAGCACCTCAGTACTGACCATGCTCGTTGCTGCTGGCTCTGTTGTCAACACAGAGCTTGCCGCCCTACAGACGAATGCAAACGAAGCTTGTGCGAAGCCGCTTCGTCACACACAAAATCATGACTCCGATGAGGCGAACGGTTGCgacgaagacgacgacgacgacgacgacgacgacgacgacgacgacgacaacgacaacgacaacaacgatgacaacgacgacaacgatgacaacgacaacgacaacaacgacgacaacgacgacgacgattcAGGCGAAGAGAAACGCAGAGCGCACAGTTCGGCACGTTcgcatcgtcatcatcacaaGAGACGCAGCAGCGGGCGACTGGACAAGCGGACAAGCGTTCAATTAGAGTTAAACGCCGAGAATCCGCATTCGCTTCGCAAGAAATTTCGTTTCAATCGCAGCGTCACCGACAGCAATGCGACCGAgcgcaccaacaacaacgaatcgGGCTTCGTTGATGCCAGCTCCAGCAGCAGCCAGTTCTTAAATGCGTCCGTAGCCTCCGCCGCCTCGCTGGCCATACACCACAGATCGAAGCAACCGCATCGATCGCCCGAAAATTGCGCCACTGGCTGCCAGAGCTCTTCGTCGGCGTCGTCATCTCCACACAGCGCTGGCGCTTCGGGGTCAAGTCCAGAATCGGGCACTGGTGAGCGCGATGACATGAAGTTCGTGTGTCCCATTTGTGAGGTGGTTTCCGCGACGCCGCACGAATTCACCAATCACATCCGATGCCACAACTACTCATCGGGCGACACGGAGAACTTCACCTGCCGCATTTGCTCGAAGGTTCTCTCGTCGGCCTCCTCTCTCGACCGCCATGTACTCGTTCATACAGGCGAGCGTCCCTTCAATTGTAAATACTGCCACCTCACCTTCACCACCAACGGCAACATGCACCGTCACATGCGCACCCACAAACAGCATCAGCATAATCACCATCATCGCCGGAACTCGAACGGAACGGCGGCTGCAGCCAAGCATCATGCTAACgccatcaacagcaacaaccacagcgGCCATGCCGTGACTGGTACAACGCAAagcgatgctgctgctgctgctgctactctGTTAACGAATGGCAACAATGGTGCAGGTGTTAAAGTGACACAACAGCCCTCACCGGCGCCCACCGCCGTAACCCAGACAGCAGCCACTAATGGCAATGGCTGTGATGTCAAAAGCCGACGCTTGAACGGCGGCGTCGTCGAAAGTTACGACAGCGATGGCGGCTGCTCAACGGATTCCTCAAGTGCCATCAGCCACAATTCAAATAATCCTAATGACcatgacaacagcaacaacaacaacaacctaatTAATATGACAACTAACGGTTACAACAATGATATAATTAGTAGTTTTAAGCGCAAGCATATCGAAGCCTTGGATACAGATTTAACATATCTGAAACGACGagcaaagaacaacaacaacaacaacaacaacaatttaatccACCCCCGCGCGGCACAGCAAACATATGTCCCGATGATTCCTCCCGACCCAAACGATATTGGCCGTCGTCCCACGTCGACGGCAACCCTCGAGCACACGCAGCATCTCTTTGCCTGTCCCGCTTGCAATGCCACCGACTTCGAGTCGTTGCTGGGCCTCAGCAAACACATGGACAGTGAACACTCTGACATTCCGGCCAAGTGCCGCCACTGCGATGTGGTCTTCCGCACACACCGCCAACTGAACGTCCATCCCTGCActaaaaccaacaacagcactCATCTACGCATAGGGCTCGCCGCCGCCAAGGATCATGCACGTTTCGGGCGCGATTTGCCGGACGAAAATTTCGCCCGAAACTTTTCTATCCCGGTAACTCAAACTCCGGAATCCACCTGCCTCAAACCTGCCGGCTGTAGCTTGGTTGGTGCCGCCGCCAACCAACTCGATACGCACAAGCTCGAGTGCCATCCACAGCCGCCGCCGCATCGACCGTTTAGCTACACCGAACGCGACCTCGCAGCAGACACGTCCAACGACGCGTCACCGAGATCTTCGAAAACTCGCCGCATCAGTGAATGTACGCCTAGCATTGAAGATCCTAAAGCCGCGGAGAATGAGGAGGAGCAACGCTGTGAAGAGTTCTTCAAGCGTTTGTACCTGAAAAGCAAACCGGACGACTCTCAGGGGCAAACTTGTGTATCACCGCAGCATTCcttggatgatgatgatgcattGGATGATCTGAAGTTTGAAGCCGATTGTGAAAAAGTCGCCCAACAGTCGCTCCATGACTCCAAGGACCTAGCCGACATACAATCCATTCTCAATATGACGTCCTCCTCATCCACTTCGAACTTCCTTAAGAACTTCGAAAACTCGGTGAATACACCGTCCAGCAATTACGGCCTGGATAAGGATGAGGAAGAAGCTCAGGACGCCTTCACTTCCGAGTTTCGCAAAATGAAGCTGCGCGGCGAATTCCCCTGCAAATTGTGCATCGCCGTGTTTCCCAATTTGAGAGCGTTGAAGGGCCATAACCGTGTCCACTTGAGCGCAGCCGGTCCTTCCGGGCCGTTCCGTTGCAACATGTGCCCGTACTCCATTTGCGACAAGGCCGCTTTGGTGCGCCACATGCGCACGCATAACGGAGACCGGCCGTACGAATGTGCCGTGTGTAATTACGCCTTCACCACGAAAGCCAACTGCGAGCGCCACTTGCGCAACCGTCACGCCAAAACTACGCGTGACGATGTAAAGCGCGCCATTATATATCACCCTTCAGAGGATTCCTCTTGCGACGATCCCAGTaagaaattgcatttgttCTCGTCGCCGGAAATCGAAGATGACGTCGAGCTGCAGTATCAGCACCATCAGCCCTCCGACCGCTCTACGCCAGTGTCGCACCTCAAGGAGGTCCTGACCAATGACGAAGGCCGTGCGAACAAAACGGTCAAAATCCAAGTGAAGAGTCTCGAACAGCTCTTGGATAGAGCAAATGTGTCCTCCTCCGCTTATAACGAGGCTTTTGAAGAGAACGCACCACATCAACCTGACTCATCCGACCAGTCGCCCATCGACCTGAGCATGGATGTCCTCGATTTGAGCAAGAAACCTGCCAAACCTTTGCTATCAGCTCCAGCTGATCGGACTTCGGaagcagctgcagctgcagctgcatCTACTGCAACAGTGCCCTCGACACCAATGAACGACGAGAGTGATCCCAAGTCCGAAATGTGTGTCCTCGAAAAGAACCAGCAATATTTATTGGCACAGCAACACCTTATCCAGGACACCTTTCCGAAGATGGTCGACCCCACTCATTATTTCCAACAACTATATCGCAATTTGGTCTTTCCGCCCCTAAACCCCATCAACCCATTTTTCCTGCACAACTCATTTCTTCCGAACAACTTGGGCGACCTGCAAAAATACGCTCCTCTGATGAATCGCATGTTCGGCCCGGCTCCGTCTGCGGTTGCGCTAGCTGCTGAGGCCAAGGGCAATGCTGCTGAGCCAAGCCTCTTGCCGACTGCAAACATGCCGCCTCAGGCGAGTCCGCTACTTTCGGACAAATCCAGCGTTTCATCGGTGACTTCAGCTTCTCCTGTGAGTACAAACACTATGCATCAACACAAGCCTGTTGCTCCGCCCACACCGCCTCACACCGCCTTAAGCATCCATCGGCATCAGAATATCCAGTCCAGCGCTTTGGCAGGAGGGCCGGTCAAGATGGTTATCAAAAACGGGGTACTGATGCCGAAACAAAAGCAAAGACGCTATCGCACAGAAAGACCCTTCGCTTGTGAGCACTGCTCTGCGAGATTCACCCTGCGCTCCAATATGGAGCGGCATGTCAAGCAACAGCATCCGCAATTCTATGCTCAGCGGCAGCGAAGTGGTCATCACATTTTGCGCGGGCGTGGCGCCAGCAACACAGCCGTCATCAACAGCATGACACACTTGCAAGCAGCCATTGCCGCTCACAGTGGCAGTCACgcgggcggcggcggcggcggtggcggcggtcACGTTGGCTCCGCTTCGATTTCGGATCAGGTTAAGTACGCCATTTTGGCTCAGCAATTGAAGGCACGCAAGGATACCGACCTGCTACATCAGGCCCTCGCACACGGCTCCGGCAGCGTAGCGCCCGCACATCTGCCGTTGGCGCACGCTCCCGCCGATGtccaattaaatttcaacaatttaaataattccagCCTCAATTCCGGCTCATTAGAGGAAGAAGATGATCCGAAACTGGTCATTGATGaagacgacaacgacaacgacgacgtcgacgacgacgacgacgacgacgacgacgatgatgatgatgatatcgAAGAGATTGTAGATGGCAACGAAGAGGAACCCCTTGAAGGTCCAGAGAACAGCTTACTCTTAAAAGAGAGTTTAAAGAACCATCATGAGGCGCATGTAAATGAGGACCTTCTGCCACAAATCGTCAATAAAAAGAAGCCGAATGAATGTGCAAAAAAAGTTGCAGAAACCATCCTTGAGCAAGCCATTAAAGCTGGTGGCTCTAGTTCCAGTTTGGGCTCTCAATCTACTGTCGCGGCGAAACCCAATCCAAATTCCTCCCAAAAGCCTCCTCCCACCACCATGAAAACCATGATCGCTCAAGCGGAATCAGTCGGTAAATTCCTGAAGGAAGTCGCTAGTTCACCATTCAAAGACGAATCTCAGGACCTAGTGCCGGTGGCAAAACTAGTGGACAACGCCACCACCAACTCCATGTCATTCAACAACTACTTCCGGCCCAGCGACGTCGTCAACCAACTGGAGCAGAGTGACGAAGAGGGGTTGGTGGCCTCCGGCAGTGCCTCCGAGAGCAACAACTCGGGCACCGAAGACATCTCATCCGCAGCCGAGCCAAAGAAGAAATCCGCTTACAGTCTAGCTCCGAATCGCGTCTCTTGTCCCTACTGCCAGCGCATGTTTCCCTGGTCCAGCTCGCTGCGCCGACACATTCTTACACACACCGGCCAGAAGCCGTTCAAGTGCTCGCACTGCCCCTTACTCTTCACCACCAAGAGTAACTGTGATCGGCACTTATTGCGCAAACACGGCAACGTCGAGTCCGCAGTTTCGGTGTACGTGCCCACCGAGGACGTCAATGAGCCCATACCAGTTCCGAAATCGATCGAAGAAAtcgagcagcagcaacgccaACGCCAAGAACAGGAACGAAAACGCCAGGCAGAGGAGCACACTCGCCTGGAAAGAGAGCAACGCGAACAACTGGAACaggaacagcagcagcaacagctatTGAAGCAACTGGCAACCGCACAATTCAAACAATCCGCTGCCCCAGTCACGTCCACGGGCAACACATCCACGAAATTACCTTTCAAGTGCCATCTTTGCGAGTGCTCCTTCGCTGAGCGTATCCAGTGCCTCGATCACATCAAAATCCAGCACACCCCAGAGTTTTCACTGCTCTTGGCCAAAGGTGCCATTGAGACCGATCCGGAGCATAATCAGGGCAATTCGGCCGAAGATGAGGAACTCCGCCGTCCACCGCCCGGCGAAGAGAATACCGCACGCAATGGCAAATATCCCGATTATAGTAACCGCAAAGTGATATGCGCCTTTTGCGTACGACGCTTCTGGTCTACAGAGGATCTGCGTCGCCACATGCGCACCCATTCCGGCGAGCGCCCCTTTCAATGCGACATTTGCTTGCGCAAGTTTACGCTCAAGCACAGCATGCTGCGTCACATGAAGAAGCACAGCGGTCGCcatgacagcagcagcatttcAGCCAGCGAGCTCTCAAATGCCGGCAATAGTGGCTCCGACTTTTCCGATGACGAACAAATGCCGCCTGCAACGCCcaccaacgccaacgccaTGATGATGGCCGCCAACACGCTCGCCCTGCGTACGCACAAGATTCAGGAACTCCTGAGCAAAGCCAGCGAATGGCGCTCGAATCGTACTTCTTTGGGCGAACACAAAGAGAACATCGCCGAAGACCACCACAGCCAGACGGATCTCATTGGCAACTTGTTGGGCATCAGCGATCAAGGTATTCTGAACAAACTACTGTCATCAGCAGACGAAGCAGCCAAGTTTTTGGGTGTGGACAAGTAA
- Protein Sequence
- MMKTATAAAAAAAAAAQHKQQLLTDNNKHAASLSPVKMERRNSTTSESSLEHLDLGRTPKKLSALLSSVTSTPHINSSSGSSGSQSTSVLTMLVAAGSVVNTELAALQTNANEACAKPLRHTQNHDSDEANGCDEDDDDDDDDDDDDDDNDNDNNDDNDDNDDNDNDNNDDNDDDDSGEEKRRAHSSARSHRHHHKRRSSGRLDKRTSVQLELNAENPHSLRKKFRFNRSVTDSNATERTNNNESGFVDASSSSSQFLNASVASAASLAIHHRSKQPHRSPENCATGCQSSSSASSSPHSAGASGSSPESGTGERDDMKFVCPICEVVSATPHEFTNHIRCHNYSSGDTENFTCRICSKVLSSASSLDRHVLVHTGERPFNCKYCHLTFTTNGNMHRHMRTHKQHQHNHHHRRNSNGTAAAAKHHANAINSNNHSGHAVTGTTQSDAAAAAATLLTNGNNGAGVKVTQQPSPAPTAVTQTAATNGNGCDVKSRRLNGGVVESYDSDGGCSTDSSSAISHNSNNPNDHDNSNNNNNLINMTTNGYNNDIISSFKRKHIEALDTDLTYLKRRAKNNNNNNNNNLIHPRAAQQTYVPMIPPDPNDIGRRPTSTATLEHTQHLFACPACNATDFESLLGLSKHMDSEHSDIPAKCRHCDVVFRTHRQLNVHPCTKTNNSTHLRIGLAAAKDHARFGRDLPDENFARNFSIPVTQTPESTCLKPAGCSLVGAAANQLDTHKLECHPQPPPHRPFSYTERDLAADTSNDASPRSSKTRRISECTPSIEDPKAAENEEEQRCEEFFKRLYLKSKPDDSQGQTCVSPQHSLDDDDALDDLKFEADCEKVAQQSLHDSKDLADIQSILNMTSSSSTSNFLKNFENSVNTPSSNYGLDKDEEEAQDAFTSEFRKMKLRGEFPCKLCIAVFPNLRALKGHNRVHLSAAGPSGPFRCNMCPYSICDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKTTRDDVKRAIIYHPSEDSSCDDPSKKLHLFSSPEIEDDVELQYQHHQPSDRSTPVSHLKEVLTNDEGRANKTVKIQVKSLEQLLDRANVSSSAYNEAFEENAPHQPDSSDQSPIDLSMDVLDLSKKPAKPLLSAPADRTSEAAAAAAASTATVPSTPMNDESDPKSEMCVLEKNQQYLLAQQHLIQDTFPKMVDPTHYFQQLYRNLVFPPLNPINPFFLHNSFLPNNLGDLQKYAPLMNRMFGPAPSAVALAAEAKGNAAEPSLLPTANMPPQASPLLSDKSSVSSVTSASPVSTNTMHQHKPVAPPTPPHTALSIHRHQNIQSSALAGGPVKMVIKNGVLMPKQKQRRYRTERPFACEHCSARFTLRSNMERHVKQQHPQFYAQRQRSGHHILRGRGASNTAVINSMTHLQAAIAAHSGSHAGGGGGGGGGHVGSASISDQVKYAILAQQLKARKDTDLLHQALAHGSGSVAPAHLPLAHAPADVQLNFNNLNNSSLNSGSLEEEDDPKLVIDEDDNDNDDVDDDDDDDDDDDDDDIEEIVDGNEEEPLEGPENSLLLKESLKNHHEAHVNEDLLPQIVNKKKPNECAKKVAETILEQAIKAGGSSSSLGSQSTVAAKPNPNSSQKPPPTTMKTMIAQAESVGKFLKEVASSPFKDESQDLVPVAKLVDNATTNSMSFNNYFRPSDVVNQLEQSDEEGLVASGSASESNNSGTEDISSAAEPKKKSAYSLAPNRVSCPYCQRMFPWSSSLRRHILTHTGQKPFKCSHCPLLFTTKSNCDRHLLRKHGNVESAVSVYVPTEDVNEPIPVPKSIEEIEQQQRQRQEQERKRQAEEHTRLEREQREQLEQEQQQQQLLKQLATAQFKQSAAPVTSTGNTSTKLPFKCHLCECSFAERIQCLDHIKIQHTPEFSLLLAKGAIETDPEHNQGNSAEDEELRRPPPGEENTARNGKYPDYSNRKVICAFCVRRFWSTEDLRRHMRTHSGERPFQCDICLRKFTLKHSMLRHMKKHSGRHDSSSISASELSNAGNSGSDFSDDEQMPPATPTNANAMMMAANTLALRTHKIQELLSKASEWRSNRTSLGEHKENIAEDHHSQTDLIGNLLGISDQGILNKLLSSADEAAKFLGVDK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -