Cqua015310.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- Lip3
- Assembly
- GCA_949752815.1
- Location
- OX457080.1:275803-284318[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.0054 0.56 11.3 0.1 2 23 452 473 451 473 0.97 2 15 0.0013 0.13 13.3 2.1 1 23 479 502 479 502 0.92 3 15 0.0016 0.16 13.0 0.2 1 20 539 558 539 560 0.95 4 15 1.2e-05 0.0013 19.6 1.8 1 23 568 590 568 590 0.98 5 15 0.014 1.4 10.1 2.7 1 23 596 618 596 618 0.97 6 15 0.00055 0.057 14.4 2.6 1 23 624 646 624 646 0.95 7 15 7 7.3e+02 1.5 2.7 2 23 1080 1102 1079 1102 0.94 8 15 0.77 80 4.5 0.3 1 23 1127 1149 1127 1149 0.91 9 15 0.39 41 5.5 3.2 1 23 1157 1181 1157 1181 0.95 10 15 0.33 35 5.7 1.9 2 23 1186 1207 1185 1208 0.93 11 15 0.0001 0.01 16.8 0.3 2 21 1224 1243 1223 1244 0.94 12 15 0.0022 0.23 12.6 0.1 1 23 1252 1274 1252 1274 0.97 13 15 1.9e-06 0.0002 22.2 2.8 1 23 1280 1303 1280 1303 0.98 14 15 0.00011 0.011 16.7 1.4 1 23 1309 1331 1309 1331 0.98 15 15 0.00029 0.03 15.3 2.2 1 23 1337 1359 1337 1359 0.95
Sequence Information
- Coding Sequence
- atGGCATACACTAGGCCTAACATCTTACAATTAGTGACTTCTGCAGTGTCTCTTCTACTGATCGGCCATCTTCAACATACGGAAGCACTAAAACTAACCGCTAACTTAATATCCACTTACAATTATCCGGTCGAAGAGCATACTGTTCACACTTGCGATGGCTACATCCTTAGCATCTACCGCATTCCTCATTCGCCACGGCTGCTCGATCAACAGCCGAAAGACATCGTGAAGCCGATTGTCTTCTTTCAGCACGGTATATTCGGAGCCTCCGATGATTGGATCCTCAATGGGCCACAGACCTCGTTAGCTTTCTTGTTCGCCGATGCAGGCTACGACGTATGGCTTGGCAATGCCCGCGGCAATACTTATTCACGCCAGCATAAGTACATCTCGGCCGAAAGTTCCGATTTCTGGAATTTCACCTGGCATGAAATCGGCGTGTACGACCTGGCTGCCATGTTGGATTATGTTCTGGACGTGACTCATCAGTCTTCGTTGCATTTTGTGGCCCACTCGCAGGGCGCAACAACATATTTCGTGCTGATGTCAATGCAACCACAATACAATCAAAAGATGAAGACGGTGCATCTAATGGCACCTGTCACCTTCTCACGCTATTACCGCTTCGTGCTGGCCAAATTGGGCAAATGGTTTGTGTGGAATCCGTCGTTTATAAACATGGTTCTCGGTGGGATGGAGTTGCTGCCCGCGTCGAGTGTACAACGCTTGTTGTGCGAGTATATTTGCTCGGCCGAGTCCAGGTTGAAGTTTTTGTGTTCTGGTCTTTTGGATTTCATGGGCGGCTGGGGAACCACACACTTTAATCATGATTTACTAACATACGTGTGTAAAACACATCCGGCTGGTGCCTCTACATCACAAGTCATCCACTTCTTACAATTATTCAGATCGGGTGATTTTCACCAATATGATCATGGCATTCAACtgaataaaatatactatCAACAGGAAACTCCGCCTGCTTATAATCTCACGAACGTTCGAAATTGTGTTAATTTGTATTACAGCAAAAATGATAACATGGTAGGTGCCGTTGATGTAGAATACTTAGCCACAATGTTACCCTGCGCTGATCTTTATCGGATACCATATGATTCCTGGAACCATTATGATTTCTTGTGGTCAGTTAATGTTAAAGAAGTAATCAACGACATAATTATCGACATATCGAATTATCATTCTAAACCGTCGACATCTTCGAAAGCAGATGCGCCGCCTGCAGTCACCAATGTCGATTCAACCATCACCTCCACCACCACTTCTGCGCAAACGGCAGCTGCTGCACAGGCCATGATGGTGCAATTGACCACCGATGGAGTCCCGAAACTATATTGTCCCGTATGCGATAAAGCACTCATATCACTTAATGGCTATgtgaaacatttaaaaaaacatgaacCGCCTGGTGGTTTTCTGTGTCGTTACTGTGATGCGCGCTTCTGCTCGGAAGACGAACTTAAAAAGCACCGCAACGCCGAACACACGACCATAACCTGTCGCATCTGCAAAGATCAGCAGCTGACATTCCTCAACGAGGAAGAGTATCGTGATCATATTCGCAGCGTACACAACGGCATCGATCGCGAGATATTCAAATGCGAAAAATGTGGTGCCGAATACAAGACGCCGGAACCATTCAAACGCCATCAGGAGAACAAATGTGGCACCATCAAGCCGTTCAAGTGCGACGAGTGCGAGATGGCTTTCTACACCAAGTACAATCTGAAACAGCACAAGATCACACACTCCGGTGAGCGTCGCTTCTGCTGCAGCTATTGTGGTAAGAACTTCCTACAGAAAGGACGGTTGGTGGAGCACGAACGCTCGCACACAGGCGAAAAgccatacaaatgcgatGTTTGCGGAAAATGTTTTGCACATCGCGAGAGCATTGTGACACATTCCTCTATACACACAGGCGTCAAGTTGGTGGAGTGTCGCTGTTGCTTGTCCCGTTTCAGCTGCTACTCCAATCTCATAAAACACCGTCGGTCACGTCCTGAAACCTGCGGACTGCCCGAGTATAATCCACCCAAGAATCGTGTCCGTACCCGCAGACCACGAATACCACCTACAATGAATCCAACTTCTGAGATCAAAGTCAGCAAtctgaataaaattattaagccCGCCGataaaatattggaaaaaagAGGTCGACGTACAAAGACAGAGCTTGAAGAAGCGGCTGATGACAAAAGCAAATCTAAGTTAACACCTAAGGCTAAGACACGCGGCAAACGAAAGCGACAACTGCCAACTGAGTCAGAGGAGGAGACAACGAATGAGGAAGTTGATGACGACGCAAAAGGCGAAGAGCCTGTTTCCTTAAAGAAGCTGCCGCAACGAAGCACACGCAAAAAAGCACCAGAATCGGTTGCAATCAAAGCAGACGATGAAATGAAGCCTGTTGTGGCTGAAGCAACACTATCTTCGTCCACTTCAAGCAGTACAGGTAACCCAATGAAAGCCGAAAAGAAGCGTTCCTGGAGCGGTGAAACAGACTCAGCCGAAGATTTCCCAGATTTTGAACCAGAAAGCGACGATTCAGGAAACGATAAAGATGACTTAAAGTTACCACTGCCTAAAGTGACCATAAAAAAGGAACAACCCGATGAAATAGCgacaacaaccataaaaacCACAACCGAAAGCACAGTAGCCGCTGATTATGTCAATACAGAGTTGAGCGTAAAGTCTGAGGATGAGCAAAATATCTTTAATGAGAAGGACAAACTACTCGATTGTCTGTTAAACGAGGGTCAAACTCAAACGGCAGAGGGTTTCTGTAAAACACTTCTCGACGATGGTGATACACCGAAACTGCCTTCCTTTGCCATGGTCAAAGTCGAAAGCTTACTGGATGAAAGCGAAGTGGTGTATATCAAGAATGAGGAACAAATGGAGGATATGTTAAATTGCaataatGACTTCACTACTGATTGCAAAATCGTGCTCGAAGATGTAACCCAACGCTATCCTAAACTTAAGAATGAAGCTACCATAAAAATAGCTCGCAATGCAAGAGCAATCGATCGTTTGTCGGtcagtcgtcgtcgtcaaatCAAAAACGCGCGCATGCCTAGACGCAAATACCGAAAACGCGGCGAAATCCGACCGGAGGATGAAGCAAGAGCACCGAAACGCATGGCGAAACTGTCGCAATCGGAGGTAAAGGAgcgtttaaaattaatgaaaaaggaGAGATCGTGGCAGTGCCCGCATTGTATTAAGTTTTATCACATACGAAAACCGTTCGAGAAGCATCTACGTGAAGAGCACAAATTACCTGAAGCggaattaaagaaaatcttcAGTGAAGAAGCTCAAAACGGTATACTCGGCGATGATGTATTCAGGTGTCAGATATGTTCCAAAATCTACTTAGTAGAAAAACGATTAATAGCTCACGTTAAACTGCatgGGGCGGATGGCACTCTTACTCACAAGTGCCCTTGCTATTGCTCCATCTATTTTCGTACAAAAGAGGAGGCGCTAGAACATGCTCGGCAAAACCACAAGGATCTTCTCTACTGCGATATATGCAACAAATATATGACTGGTCATGACGGTCTAAAGAACCACCGCGCTATTCACCATAGTGATGTGAAATGTGTCTCGCAACGTAATTTGCAACGCAATCTGGTATGTGACAAATGCGGCAAGAAGTACTCCAGTCGCACTTCGCTCACCGATCACGTTCGATCCGATTGCGGGCGCGTCCCGATTTACCCATGCGATATTTGCGGTAAGCGCCTCACCACAGCTGGCATTTTAAAAACGCATTTACTGCTGCACAAGGATGAGACGCCCTATCAATGCGACAAATGTGGCAAAACATTCAAGGTGAAAGCACAATACAAGTCACATCTGAAGACACGACACACCGACTTTAAGCCGTTCAAATGCCACCTTTGTCCCAAAGAGTATCCTTATCGTGAGAGTTTGCTGACTCATATGACTGTTCACACTGGCATCAAACGCTTTCTCTGCAACGGTTGTGGAAAACGTTTTACTTGCATTTCAAATTTGCAGGCGCATCGTAAAGTGCACGCTGACACTTGTGGCATTCTTCCATTAAACGCCAGAGCCACACAGTATATGGGCGTCCAGAAGGGTAACCTATTGCTCGGTGCCAAACCTGAAGCGGGAGTTGATTACAAGGAAACAAATACACTGATTGCACGGGAGGTTATCGATCGCGATCTACCAATGGCACAAGAACTAAATTACCCTTCAGAACCGTCTGCACCATTGGCGACACAACCTCTAAACTATGCACAACCAACACCGTCTCAACTATTGCTACCGCAATTGATGATCCCCCCATTTATAAATGATTCGCACTCCTCATATTGA
- Protein Sequence
- MAYTRPNILQLVTSAVSLLLIGHLQHTEALKLTANLISTYNYPVEEHTVHTCDGYILSIYRIPHSPRLLDQQPKDIVKPIVFFQHGIFGASDDWILNGPQTSLAFLFADAGYDVWLGNARGNTYSRQHKYISAESSDFWNFTWHEIGVYDLAAMLDYVLDVTHQSSLHFVAHSQGATTYFVLMSMQPQYNQKMKTVHLMAPVTFSRYYRFVLAKLGKWFVWNPSFINMVLGGMELLPASSVQRLLCEYICSAESRLKFLCSGLLDFMGGWGTTHFNHDLLTYVCKTHPAGASTSQVIHFLQLFRSGDFHQYDHGIQLNKIYYQQETPPAYNLTNVRNCVNLYYSKNDNMVGAVDVEYLATMLPCADLYRIPYDSWNHYDFLWSVNVKEVINDIIIDISNYHSKPSTSSKADAPPAVTNVDSTITSTTTSAQTAAAAQAMMVQLTTDGVPKLYCPVCDKALISLNGYVKHLKKHEPPGGFLCRYCDARFCSEDELKKHRNAEHTTITCRICKDQQLTFLNEEEYRDHIRSVHNGIDREIFKCEKCGAEYKTPEPFKRHQENKCGTIKPFKCDECEMAFYTKYNLKQHKITHSGERRFCCSYCGKNFLQKGRLVEHERSHTGEKPYKCDVCGKCFAHRESIVTHSSIHTGVKLVECRCCLSRFSCYSNLIKHRRSRPETCGLPEYNPPKNRVRTRRPRIPPTMNPTSEIKVSNLNKIIKPADKILEKRGRRTKTELEEAADDKSKSKLTPKAKTRGKRKRQLPTESEEETTNEEVDDDAKGEEPVSLKKLPQRSTRKKAPESVAIKADDEMKPVVAEATLSSSTSSSTGNPMKAEKKRSWSGETDSAEDFPDFEPESDDSGNDKDDLKLPLPKVTIKKEQPDEIATTTIKTTTESTVAADYVNTELSVKSEDEQNIFNEKDKLLDCLLNEGQTQTAEGFCKTLLDDGDTPKLPSFAMVKVESLLDESEVVYIKNEEQMEDMLNCNNDFTTDCKIVLEDVTQRYPKLKNEATIKIARNARAIDRLSVSRRRQIKNARMPRRKYRKRGEIRPEDEARAPKRMAKLSQSEVKERLKLMKKERSWQCPHCIKFYHIRKPFEKHLREEHKLPEAELKKIFSEEAQNGILGDDVFRCQICSKIYLVEKRLIAHVKLHGADGTLTHKCPCYCSIYFRTKEEALEHARQNHKDLLYCDICNKYMTGHDGLKNHRAIHHSDVKCVSQRNLQRNLVCDKCGKKYSSRTSLTDHVRSDCGRVPIYPCDICGKRLTTAGILKTHLLLHKDETPYQCDKCGKTFKVKAQYKSHLKTRHTDFKPFKCHLCPKEYPYRESLLTHMTVHTGIKRFLCNGCGKRFTCISNLQAHRKVHADTCGILPLNARATQYMGVQKGNLLLGAKPEAGVDYKETNTLIAREVIDRDLPMAQELNYPSEPSAPLATQPLNYAQPTPSQLLLPQLMIPPFINDSHSSY
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -