Cqua004719.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- -
- Assembly
- GCA_949752815.1
- Location
- OX457077.1:39780723-39783381[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.12 13 7.1 0.4 1 15 139 153 139 157 0.79 2 12 0.063 6.6 8.0 0.5 1 21 180 200 180 201 0.95 3 12 0.00027 0.029 15.4 2.5 1 23 216 238 216 238 0.98 4 12 1.6e-05 0.0017 19.3 0.6 2 23 251 272 250 272 0.97 5 12 0.00038 0.04 14.9 0.8 1 23 298 319 298 319 0.96 6 12 2.6e-05 0.0027 18.6 0.8 1 23 325 347 325 347 0.97 7 12 1.5e-05 0.0016 19.3 1.3 1 23 369 391 369 391 0.98 8 12 5.6e-08 5.9e-06 27.0 0.7 1 23 397 419 397 419 0.99 9 12 0.00021 0.022 15.8 2.0 1 23 425 447 425 447 0.98 10 12 4.8e-05 0.005 17.8 4.2 1 23 453 475 453 475 0.98 11 12 3.2e-05 0.0034 18.3 0.2 1 23 479 501 479 501 0.98 12 12 0.12 13 7.1 0.3 1 23 513 536 513 536 0.92
Sequence Information
- Coding Sequence
- ATGGAAATAGTTGAAGATGAAATGAAACTGAAATGGGTCATCGTTGAGGACGGCTCCACTACGGAGAACACAGAGCATGATGAGGCAGAGTCGACCTTTAAGGTGTTTGTGGAACAGGAACTTGtgaaagaagaaccaccaagTGAAGAATTTGAAAGTGAAAATGAAGACACAAGCTTATATGATGAGTACGTTATCGAGGAATTTCAGCCACTCGCGAAGGATCCTTTAGTGGTTGGAGATGAACAAAACTCCAGCGTGGAGAACTTTGTAGtcgtaaaaaatgaaattcaagaaTTAGATGAAGAATTAAGCGatacaAATCTTGAGAAGGAAGATGACAGTGTAGAGGAGGAAGTGCTAATCAAGGATGAATTTGTCGAACAAGAGAGTGATTGGACTAGTGAGGAAAAGTTTACTTGTGAAGGGTGTCATACTTCTTTTGATGATATACAGTCAGCGCAGGAGCATGATTGCTCTGCCAACGCCACACTACAGAATTCAGCGGTCATTCGGAGAATTAACACTTCTACTTGCTATGAGTgcagtttttgtaaaaatcgtttaaaaacaTTCGGTGGCTTAGAACGTCATCAACTTAACTGCCGAATGAAGCCATCTATTTTGGAAAATCTACAAGAAGAGTACAAATGTCCGACCTGCTTGAAACTTTTTCCCAACCTGAAATCTTTGTGTAGGCACCAGCAGGCACATGAACGATTACAAGACCATGATATTCCAAGGCATATAACCTGCGATATCTGCAACACGATATTTACGTCggcgaaaaatttaaaActacacaaaaaaatacacgACAAGAAACCAATTAAATCTATACAGCAAGCACTACCTGCAGGTGCAGAGGCCGAGTacaatgaattgaataaatttttctgtgaAATCTGCAACAAAAGTTTTGATCAAAATCTACTGGTAGTGCACAAGAATATGCATCAAAACGTTGAAGAATTCatttgcaatatttgcaatagaaaatttgaaaatttgccgAATTACAAGATGCACATGCAGTTGCATGTGGACAAAACATACGAAAGCAGGAGAAGACCTCGACCTGAACGGATAGGCATCAAATTGCCCTTCCCCTGTAATTACTGCGGTCGTGAATTTTCCCGACCGCATGAAAAGGTTAAGCATGAGCGTATTCACACGGGCGAAAAACCTTACGAGTGCGAGGTGTGCGGCAAAACGTTTCGCGTCTCTTATTCGTTAACTCTACATCTCAGAACACATACCGACATACGGCCCTATGTTTGTGCCACTTGCAACAAACGTTTTAAGACTCAGCCTGTCTACGCTCATCACCTCAATACGCACCTTAGCGAACGCCCTTTTAAGTGCAATGTATGCTCGAAAAGCTTTCGAACTTCGGTGCAATTGTGCGGCCATAAAAACAGCCATACAAAGCCTTTTAATTGTGTGGAATGCAATCGTCCCTTCGCCACCTTGTACGCCGTTAAAGTACATATGAAGACACATAATACGAGTAATAAATCCAGCGAGAATTTGAAACATCGTTGTGTAGTCTGCGGTGCCGTCTATGCCCGTCTCTTCGCTTTGCGTTTTCACTTGAACGAGCAACATTCAATGGACTTGGATAGTGTCAATCAAGCAATACATTCAGAAAACCATGTCGTCGATGCAGAAGTCGTCACGTCTTCGTCTAATGTAGAGAATGAAGCTGAGGAAACTGATGTTAATATAACTGTTGAAGAAATACCAAAGGACAATTTCGGTGCACAGAATATATCAATGCAAGAATATATTGAGGGACAAGAGATAATTGTCGATGGTTTTCAAACAGAGGAAGTAATTACGGACTGGCTAATAAAATAA
- Protein Sequence
- MEIVEDEMKLKWVIVEDGSTTENTEHDEAESTFKVFVEQELVKEEPPSEEFESENEDTSLYDEYVIEEFQPLAKDPLVVGDEQNSSVENFVVVKNEIQELDEELSDTNLEKEDDSVEEEVLIKDEFVEQESDWTSEEKFTCEGCHTSFDDIQSAQEHDCSANATLQNSAVIRRINTSTCYECSFCKNRLKTFGGLERHQLNCRMKPSILENLQEEYKCPTCLKLFPNLKSLCRHQQAHERLQDHDIPRHITCDICNTIFTSAKNLKLHKKIHDKKPIKSIQQALPAGAEAEYNELNKFFCEICNKSFDQNLLVVHKNMHQNVEEFICNICNRKFENLPNYKMHMQLHVDKTYESRRRPRPERIGIKLPFPCNYCGREFSRPHEKVKHERIHTGEKPYECEVCGKTFRVSYSLTLHLRTHTDIRPYVCATCNKRFKTQPVYAHHLNTHLSERPFKCNVCSKSFRTSVQLCGHKNSHTKPFNCVECNRPFATLYAVKVHMKTHNTSNKSSENLKHRCVVCGAVYARLFALRFHLNEQHSMDLDSVNQAIHSENHVVDAEVVTSSSNVENEAEETDVNITVEEIPKDNFGAQNISMQEYIEGQEIIVDGFQTEEVITDWLIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -