Cqua008283.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Conops quadrifasciatus
Gene Symbol
su(Hw)
Assembly
GCA_949752815.1
Location
OX457078.1:24431392-24434909[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 0.00027 0.028 15.4 1.1 1 20 138 157 138 158 0.95
2 12 8.2e-07 8.5e-05 23.3 0.4 3 23 210 231 208 231 0.93
3 12 0.0095 0.99 10.5 0.1 1 23 237 259 237 259 0.97
4 12 3.7e-07 3.8e-05 24.4 1.7 1 21 266 286 266 287 0.95
5 12 4.6e-06 0.00047 21.0 1.1 2 23 299 320 298 320 0.96
6 12 0.00028 0.029 15.4 4.6 1 23 331 353 331 353 0.98
7 12 1.4e-05 0.0015 19.4 0.8 1 23 359 381 359 381 0.97
8 12 2.5e-05 0.0026 18.7 0.4 1 23 387 409 387 409 0.99
9 12 2e-06 0.00021 22.1 2.4 1 23 415 437 415 437 0.98
10 12 8.4e-06 0.00088 20.2 0.8 1 23 441 463 441 463 0.98
11 12 0.28 29 5.9 7.3 1 23 474 498 474 498 0.92
12 12 0.0043 0.45 11.6 0.2 3 23 512 533 510 533 0.94

Sequence Information

Coding Sequence
atgaatgtaatgGAAGAAAGCAGTAGATCCAGGAAGCGTGGCATTAAAATCCTTAACGATGAACAAATTAACACAAAACCGTCGTTGCGTACTGTGACCTCGATTCCACTCTCACCCTCCAAGCATATCACAATGACAATAGCGAAGAGCAAGACATCACCAAAAcctaaaaagcaaaagagcaTGGATCACTATGTTTTGCACACTGTAAAAGGCGAAACAGATTCTGAGGGCTGCGTTGGTGAATCTATAGACTTCATTCTTACCGACAACGAtggtgaagaaaaaaaatttggattgAATGGTCCCAGTGGTGTGATCACTGAGGAGCTGCAAATAAGTGGTGATGAGCAGACCAATGACGGTGATCAAATGATGAGCGACGAAGTAAAAACCGAAGAGATTATTGAACATGTATGCGGCAAATGTTACAAAACGTTCAGACGAATTAGCGGACTTAAGAAACATTTGGATTTTTGCCGCTTTGACAGCGGTTATAGTTTACGCAAAGctgaaatgttgaaaaatttagaaaaaatcgAGAAGGATGCTATTATTATGGAAAATAAAGatgtttgcttttgttgtggGGAAAGCTTCGATATATGCCATCTTGGTCACATTAATTGTCCCGACTGCCCTAAGTCGTTTAAATCTCAATCGAGTTATGAACGCCACATCTTTATAACACACTCTGAATTTAATGATTATCCCTGCACAGTATGTAATGCAAAATTGCGCAGCGAAAATCTTCTTAAACTTCATATCGAGCAACATCAGAATCGTGGAAAACCATTTGCTTGCAAAATCTGCGGCAAAGATTTCACTCGACCTTATCACTTAAAACGTCACCAAAAGTACTCATCATGCTCAGCGGATGTTAATGACGCCATGTACTGTAAGGTATGTAATAAAGTCTTCTTCCGATTGGACAATCTACGCGCTCATCTCAAGCAACATCTGGGTAAGCTCACCAAAAAGAAATCGGAATACATGTGTACCACCTGCAATAATTGCTTTTACAGTTTGTCGACATTAAACATccatactcgtacacacacTGGCGAACGACCTTTTGATTGTGATTTGTGTGATAAGAAATTTCCTTCCTTGGTTGCTCTAAAGAAACACCGACGTTATCATACAGGAGAAAAACCATACACATGCGGAGTATGCTCTCAATCATTCGCTGTTAAAGAGGTTTTAAATAGACACATGAAACGTCATACGGGTGAGCGTCCTCACGTATGTCTAGAGTGTAAGAAAAGCTTTATTCAGGCAACTCAACTTAAAAATCATTTGCGAACACATAAACGACCCTTTCCATGTAATGAATGCAATGAGAAATTCAAAACTGAAAAGCAatTGCTGCGTCATGCAAAAGTACACAAAAGTAGAGTGTTAGTTGAAGGTAAGGAATACCACTGCAAATTGTGTGACATGCACTACATCCAACATAATTTGCTGATGAGACATTTCAAAACGAAACAACACATTGCTAAAgaagaaaccagaaaaaacCAACGCACTGACTGTGCTATTTgtgaaaagaattttaatactCCACAAAACCTCGAATTTCATATATTAAAAGTGCATGAAGTTGATCCGGGAGAATTTATCAATGAGAAACCTGTGTTGGAAACGTCTCCTATTAGAGCAGCGAAAGCGATCAAAGTGGAAGATAGTACGGCCAAAAAATTGagtgaaaataataacatgGAGCTTGTATCTTTAAAAAGTGATGAGAAAATTAGTTCTCGGTCCGAAAAGGCTGAAAGCGTCGGTGTTGTTGTACAAGAATTTATTGTTGATGAGTTGCCGACATCAAGCTCAAAGCAaacgatatttttaaataatgatgcATTTACCATTATTCCACTGGAGTCAAGTAAAATCGTTCAAACAAATACAACTAAGGAATCTGACGTAATGGGAGGTTTGGTAAAAGATTCAAAATCGAACCTTCGTAAATCTCTTGCCGAAAGCTTAGCTGCTGCTATCGCTGATACTAATGAAGttgaagaaaaagcaaaaacaaatctgTCTAACGAGGAAGATGAAAACCTTAAACAAAATGTTGCCAAATTATTAGATATGCTTGTGGATAAGGCAACGCTTAAGAAATTCGGTTGGCCCGACTATTCGGTAGAGAAAGTGCTTTGTAAAGTGATTGAAAATTGTGGATACGACTTATCACACGATTCGGAGAATTATAAACACTGTGACTATACGACACGTATGCGAGAGTACGTCAAACTTCTATTTACTGTCGTCATACAAAACGATTCAATCAAAGaactattaaataattatccCATCGACGAGGTAATAGAGTATGTTTTAGgcaacgacgatgacgatgatgatgatgataacgacAATGATGAAACTATTGAAAATGCCGATAACAACTATGAAATCTCCTCTGATAGTGAAGACATTCAGTTATAG
Protein Sequence
MNVMEESSRSRKRGIKILNDEQINTKPSLRTVTSIPLSPSKHITMTIAKSKTSPKPKKQKSMDHYVLHTVKGETDSEGCVGESIDFILTDNDGEEKKFGLNGPSGVITEELQISGDEQTNDGDQMMSDEVKTEEIIEHVCGKCYKTFRRISGLKKHLDFCRFDSGYSLRKAEMLKNLEKIEKDAIIMENKDVCFCCGESFDICHLGHINCPDCPKSFKSQSSYERHIFITHSEFNDYPCTVCNAKLRSENLLKLHIEQHQNRGKPFACKICGKDFTRPYHLKRHQKYSSCSADVNDAMYCKVCNKVFFRLDNLRAHLKQHLGKLTKKKSEYMCTTCNNCFYSLSTLNIHTRTHTGERPFDCDLCDKKFPSLVALKKHRRYHTGEKPYTCGVCSQSFAVKEVLNRHMKRHTGERPHVCLECKKSFIQATQLKNHLRTHKRPFPCNECNEKFKTEKQLLRHAKVHKSRVLVEGKEYHCKLCDMHYIQHNLLMRHFKTKQHIAKEETRKNQRTDCAICEKNFNTPQNLEFHILKVHEVDPGEFINEKPVLETSPIRAAKAIKVEDSTAKKLSENNNMELVSLKSDEKISSRSEKAESVGVVVQEFIVDELPTSSSKQTIFLNNDAFTIIPLESSKIVQTNTTKESDVMGGLVKDSKSNLRKSLAESLAAAIADTNEVEEKAKTNLSNEEDENLKQNVAKLLDMLVDKATLKKFGWPDYSVEKVLCKVIENCGYDLSHDSENYKHCDYTTRMREYVKLLFTVVIQNDSIKELLNNYPIDEVIEYVLGNDDDDDDDDNDNDETIENADNNYEISSDSEDIQL

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_01201055;
90% Identity
-
80% Identity
-