Cqua021461.1
Basic Information
- Insect
- Conops quadrifasciatus
- Gene Symbol
- Mrpl14
- Assembly
- GCA_949752815.1
- Location
- OX457081.1:23522240-23526147[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.0077 0.81 10.8 0.5 1 23 123 146 123 146 0.94 2 13 0.00088 0.092 13.8 0.2 2 23 152 174 151 174 0.94 3 13 6.8e-05 0.007 17.3 2.4 2 23 184 206 183 206 0.95 4 13 2.6e-06 0.00027 21.8 1.5 1 23 378 400 378 400 0.97 5 13 0.0024 0.25 12.4 3.7 2 23 407 429 406 429 0.93 6 13 0.0014 0.15 13.2 5.0 2 23 438 460 437 460 0.96 7 13 6.5e-05 0.0068 17.3 2.4 1 23 466 488 466 488 0.96 8 13 0.0002 0.021 15.8 0.3 1 23 493 517 493 517 0.92 9 13 0.0011 0.11 13.5 1.5 3 23 523 543 522 543 0.99 10 13 0.00016 0.017 16.1 1.5 1 23 549 571 549 571 0.98 11 13 8.6e-07 8.9e-05 23.3 2.6 1 23 577 599 577 599 0.96 12 13 7.7e-08 8e-06 26.6 1.4 1 23 605 627 605 627 0.99 13 13 0.14 14 6.9 0.3 1 23 632 655 632 655 0.87
Sequence Information
- Coding Sequence
- ATGGAACTAGAAATGGATAAAATATGTCGTGTCTGCTTAAAAGGGGATACTGAGCTCTACCTAATTTTTGATGATAAGTATTCACTGGACAATAATAGTTTGGCGCAAATTTTGTCAGAGTGCACGACATACAAGGTCAATCGTTATGATGAACTTCCGCATCAGATTTGCGGAGACTGCATGGACCTTGCCAAAAAAGCATTTATATTTAAACGCGAGTGTGAGAAGGCTTATCGTCAACTGATTAGTATGTTGTCGGATAGCTTCAGCAGTCAAAATGGAAATGTTGTATCATCAAGTCGAATTAAACTGGAGTCTGATGGCATGCGCCAAGCAAAATCCACGCAAACAGATGACAGTACAATGTATCCATGTGAGCGTTGCGAGCAGaagtttttctctttcgaTGCCTTACGGGTGCACAGAGAGAACGAACACAAAGGCAGTGCTATTGTCTGTCGCTTCTGTGCAAAATCCTTTAGTCGAGTGGGTTATTTGAAGACACACATAGCAGTATTTCATCCAGAATTTGGTTATACGTCCCACAACCAGTGTAGTATTTGCAAACGTCAGTTTACGAGACGCGAACATATGCGCCGACATTTGGCCGTGATAcataaaattgtagaaatagtAGATGTGTCCGATATGAATAATCAAGGCGAGAAAGTAACGAAATGTGGAGCTGGCATGGAACTGGAGGACGAACACCCTCAAGTAAATGACGAAGGCGGTAAATTGGGCAAGCAATTTGTAAAAGAGACTGATTGCTTTGCTATTTCGATCACTGCGGATGCTGTAGCGCATTCGAATCGCACAAGTCTTATTGAAAGCGTCGACGAAAGAGACGACGATCAGCCCGATGTTAAACCATTATTAAGTgatgaagaagatgaaaaacCTCTTTCGGAGTTGGCGAGAGTTCCCAGTAAAAGCTTTGTCGAAATTTTAATAGATCAAGGGACAAATGATGAAGCGATAAAGTCAGTTGCGGTCGATCCAACCAATACCATTAAAATAGAAACTGCTACTTCTCCAACACTGCCTTTTAATGATGAGGTTTTAACCGTCGAACCGTGTCAACAATTCTCACCCGCCCTAACCACTGACACTCTAAGTGAAGACAAAGAATACAAATGTCCAGCTTGTGGCAAGGCTTTCCACAGACGGTCTACGCTACAAAAACATCTTGCAAATCATATAAAGAAGAAACCACTCTCttgcaaaatatgtatgaaacGTTTTTCACGCGCTGATTTCCTAAAGCGTCATTTACACAACAAACATGATAAGGCGGTGAATGGACCATTAAAATGCGATGAGTGTAACCTAAACTTCGTACACCCCACACATTTCAAACGacacaaagaaacaaaacataGTAGTTTAAAGATGCATGCCTGCGAAATATGCCAGAAAAGTTTTACGACGAAACTTTACATGCAGAGGCACTTGGAATCGCACACTAAGAAACGCTTTATGTGCAAAGAGTGCGCCGAAAGCTTTTTTACCAGGGACGAGCTAAATGAACACATCAAATCCGAAGGTCATGATAAACCATTACTCTGTCCGATCTGTGGCCTGCGTTGCAAAACTAACAATATATTAACAGTGCATATGCGACGACACAAGGGTGAAAAGCCATTCAAATGTAAATTCTGTAGTAAAGGTTTTCCACGAATGGATGACTTGCGCATTCATGAGAAATACCACACCGGTGAAAAGTCACATTTTTGTGAGACGTGCGGTAAAGGATTTCAACGTAAATATAATCTAACTATACACATGCGTGTCCACACGGGTGAAAAACCATACCAGTGTCCCCATTGTCCACAGGCCTTCTCGCAGAGCAACGATTTGAAATCGCATATACGACGGCATACCGGTGAACGTTTTCGTTGCGAATATTGTGGAGCTCCCTTTTTGCAGGGCTATCAAATGCGCCAGCATAAATTAGCTGAACATGGTGTCAAAGAGAACCCACCCACACAACGTTTAGAGAAATATACATCTCCAGAGGAACAGGAGCAACAAATTAAACAGAATTTGCAACGCGAATTAGCATTTCCTGGTAACGATTTTGTCACAAGGATTTTGGCGATTGGCAGCTACACAACCAACCAAGTGGCAAAACCTCGGCAATTCCATACTACAGAACCATGCCATGAAATACGTAAACTGGCACGTTTACGTGTCGTGGACAATAGTGAAATTGGCAAAAGTGCTATGTTGGAAGGGCGCCCACCGCGCTGTATACATGTTTACAACAAGCGCAGCGTTGGCTACCTCGGCGATAAAGTGTTGGTTGCCATCAAAGGAGAAATGAAGAAAGCTATTTTGGTGGGTCTAAAGCAGAATCAAAAGCCTAAAGTAccaaaattcgacaccaatAATATTGTTCTGATTGACGACAACGGTACACCATTGGGAACACGTATTCATGTGCCGATACCCACGAAACTGCGAACAatacttaaagaaaaaaccattGCTAAAGGAGCCGACTATACTAAGCTATTAGCAATAGCTAGTCGATACGTGTAG
- Protein Sequence
- MELEMDKICRVCLKGDTELYLIFDDKYSLDNNSLAQILSECTTYKVNRYDELPHQICGDCMDLAKKAFIFKRECEKAYRQLISMLSDSFSSQNGNVVSSSRIKLESDGMRQAKSTQTDDSTMYPCERCEQKFFSFDALRVHRENEHKGSAIVCRFCAKSFSRVGYLKTHIAVFHPEFGYTSHNQCSICKRQFTRREHMRRHLAVIHKIVEIVDVSDMNNQGEKVTKCGAGMELEDEHPQVNDEGGKLGKQFVKETDCFAISITADAVAHSNRTSLIESVDERDDDQPDVKPLLSDEEDEKPLSELARVPSKSFVEILIDQGTNDEAIKSVAVDPTNTIKIETATSPTLPFNDEVLTVEPCQQFSPALTTDTLSEDKEYKCPACGKAFHRRSTLQKHLANHIKKKPLSCKICMKRFSRADFLKRHLHNKHDKAVNGPLKCDECNLNFVHPTHFKRHKETKHSSLKMHACEICQKSFTTKLYMQRHLESHTKKRFMCKECAESFFTRDELNEHIKSEGHDKPLLCPICGLRCKTNNILTVHMRRHKGEKPFKCKFCSKGFPRMDDLRIHEKYHTGEKSHFCETCGKGFQRKYNLTIHMRVHTGEKPYQCPHCPQAFSQSNDLKSHIRRHTGERFRCEYCGAPFLQGYQMRQHKLAEHGVKENPPTQRLEKYTSPEEQEQQIKQNLQRELAFPGNDFVTRILAIGSYTTNQVAKPRQFHTTEPCHEIRKLARLRVVDNSEIGKSAMLEGRPPRCIHVYNKRSVGYLGDKVLVAIKGEMKKAILVGLKQNQKPKVPKFDTNNIVLIDDNGTPLGTRIHVPIPTKLRTILKEKTIAKGADYTKLLAIASRYV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -