Basic Information

Gene Symbol
nfxl1
Assembly
GCA_948455865.1
Location
OX418224.1:7526103-7534126[-]

Transcription Factor Domain

TF Family
zf-NF-X1
Domain
zf-NF-X1 domain
PFAM
PF01422
TF Group
Zinc-Coordinating Group
Description
This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 9 0.26 2.6e+04 -2.3 1.1 15 19 177 181 176 181 0.81
2 9 0.035 3.6e+03 0.5 0.8 4 10 212 218 211 218 0.95
3 9 7.2e-08 0.0072 18.7 15.6 1 19 226 243 226 243 0.99
4 9 0.25 2.5e+04 -2.2 1.2 7 13 247 253 247 254 0.74
5 9 1.9e-08 0.0019 20.6 12.4 1 19 279 297 279 297 0.99
6 9 0.24 2.4e+04 -2.1 1.2 6 10 322 326 321 326 0.89
7 9 7.7e-11 7.7e-06 28.2 11.3 1 18 332 349 332 350 0.98
8 9 0.6 6.1e+04 -3.4 0.6 5 10 374 379 374 379 0.74
9 9 2.5e-07 0.025 17.0 11.5 1 17 385 401 385 404 0.91

Sequence Information

Coding Sequence
ATGACTGGACGAGGAGCACCTAATGCATGGAGAGATCGCAGTAAAAACCAAAATAATCAACAGAAAAGGCAAGAGTTGCCAGGTTCGCGTGGTGATTCTGGAAGTCAGGTTGCCAATCTGTCGCAAGCCAATGAGAAGTTTCTTGCAGCCAAGTCACGAATGCAGGCTAGTGTACAGAAGCATCTGCACGACGATTATCATTCGTCCTCCGAAGAAGACGAACTTGAAACTGAAAACATCCTTAGCTCTGTATTGAAAAAGTATTCGTCCTTAGCTGATGACTCGGTGCTTGATCTCGGCAGAACACAGAAGTTTCTTGAAGACGCTTTTCAATCTGGTGCTGCCGTATGCCTGATCTGTATTGCGACTGTGAAAAGACTAGATGCTATTTGGAGTTGCACAAAATGCTTTTGTTTTTTCCACGTAATTTGCATCCAGCGATGGGCGAAGGACAGTGTTACACACCAGAAGCAAGTGCTGGAAGAGAGGCAGCAGGCCACGCCCAAATGGGATAAACTCTCCTGGGCATGTCCAAAATGCCGGAATAATTACTCGTCCTCTGAAATTCCGCAAAAATATTATTGCTTTTGTGGCAATGTGGAAGATCCAGAGTTCCATCCATGGCTGGTGCCGCATTCCTGTGGTGAGACATGCAACAAACCACTGCAGCCATCTTGTGGTCACCTTTGTCTGCTACTCTGTCATCCAGGACCGTGTCCGCCATGTCCGAAAATGGTGCAGTCGCGCTGTCACTGTGGCAAAGCTCCTACAAGACCGCAACGGTGCAGCAACAAACATTGGTCATGTGGCAGCAAGTGCAGCAAGTACCTGTCATGCGGAAAGCACACATGCGACAACTTGTGTCATAGTGAGGAGTGCGCGCCGTGCCCTCGTCAGTCCACTCAGAAATGTCAGTGCCAACGCAATAGCGCTGTCAGGCAGTGCGCAGAACCCGAGTGGCAGTGCGATCAGGTATGTGGCAAGCCACTAGGCTGTGGAAATCACAAGTGCGAGCTGGTGTGCCACAAGGGTGATTGTGGGGCATGCGCGTTGACACTGACCCGCAGCTGTCCGTGCGGCAAGTCCGAGCACCTTTTGCCCTGCGATAAGGATACACCCACTTGTGGTGACACATGCGGCAAAACTCTGGAGTGCGGCCAGCATACTTGCTTCCTGCGATGCCATAGTGGCAAGTGTGGACCGGTGTGTAGAAACTATTCAAATTCGTATCATGATTTTTCTTCGAAGGATGAAGCCCACATAGGTCTGATACCTGTGCGTGGGTAA
Protein Sequence
MTGRGAPNAWRDRSKNQNNQQKRQELPGSRGDSGSQVANLSQANEKFLAAKSRMQASVQKHLHDDYHSSSEEDELETENILSSVLKKYSSLADDSVLDLGRTQKFLEDAFQSGAAVCLICIATVKRLDAIWSCTKCFCFFHVICIQRWAKDSVTHQKQVLEERQQATPKWDKLSWACPKCRNNYSSSEIPQKYYCFCGNVEDPEFHPWLVPHSCGETCNKPLQPSCGHLCLLLCHPGPCPPCPKMVQSRCHCGKAPTRPQRCSNKHWSCGSKCSKYLSCGKHTCDNLCHSEECAPCPRQSTQKCQCQRNSAVRQCAEPEWQCDQVCGKPLGCGNHKCELVCHKGDCGACALTLTRSCPCGKSEHLLPCDKDTPTCGDTCGKTLECGQHTCFLRCHSGKCGPVCRNYSNSYHDFSSKDEAHIGLIPVRG

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
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