Canc007558.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418224.1:21547051-21551326[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 0.33 1.6e+02 5.4 2.0 1 11 142 152 142 159 0.89 2 9 3.4e-05 0.016 18.0 0.4 1 23 168 190 168 190 0.98 3 9 2.6e-06 0.0013 21.4 3.1 1 23 196 218 196 218 0.95 4 9 2e-05 0.0099 18.6 0.8 1 20 224 243 224 245 0.96 5 9 1.7e-06 0.00083 22.0 2.5 1 23 265 288 265 288 0.97 6 9 1e-07 5e-05 25.9 4.0 1 23 301 323 301 323 0.98 7 9 2e-05 0.0097 18.7 6.4 3 23 380 401 378 401 0.95 8 9 2e-06 0.00098 21.8 3.0 1 23 412 434 412 434 0.97 9 9 9.6e-06 0.0047 19.7 0.0 1 23 439 461 439 461 0.98
Sequence Information
- Coding Sequence
- ATGATTTGTTACGAAATATCAGTGGTAGTAACAGGGCCTGGTGCAGTCCTTGCCGATCACTTGATTGAGTTCAACAACAACAATAACAATAACAGCAGTACTACCAATAACAACACGAACGGAGGAAGCAGCAGTAGCAGCAGTCCATCGGACAAGGACAGGGATCTGGTGGATGGCCAGAAACTGCGCAAAGATGTTCTAGCACCGATGTGGGACGTTTTCGAGAAGATATGGCCCCGCAAAGAAGGAGCCAATGTCTCGTGCATTCATAATATAAGTGCTTACAACAACATCTTTATTAATCATTATGGATATCTACCAAAATCAATTGGGGTTATCACCTTCCCCAACTTTGAGAAGAATGTGTGCGAGAAAACGATGGTTAGAGTGGTTCACAGGCGGTACGTAGTAAGTAAGCTGGCGTTTCCGTGCTCACTGTGCGGCGAATGCTTCAAGTTTGACCAGGGATATGAGAGAGGCAGTACGCCGGACAGCAAATCATACGACTGCAATACCTGTGGCAAGGTATTTCCAAAAAGGATCTATTGGAAATTGCATCAGGCAACACACGAAGATGTAAAACCATTCCTATGTCGAATGTGTGGCAAAGGATTCGACCGAAAAGACCATCTCACCCGACATCTGTATACACATGGCACAATACGACCTTACTCTTGTGCCAAATGCACCTCATCGTTTACGAGAAAAGAGCACTTGATGCGTCATATGGAGGCATCACCCGCCTGTCAGATAGAGGGCGAAACAGTAGTTACTCCACCAGTAGTTAAGCAGTTTGTTTGTACCCAGTGCGAAATGACTTTCGGGCGCAGGGAGCACTTGACTCGTCACATGAAACGGGCACACAATATTGATTTGTTGGAGGAGGCTGATTTGAGGAAGTTTCCGTGTGAGATTTGTCATAAAGCGTTCACTAGAAGGGAGCATCTGCGGAGGCATCAGCAGATTCATCAGAAGGAGAATCCGGCGGCGTTGTTTATGGAGGTGCAGGCAACGGAGGGAGTGGCCGAGGTGGCTAGTGAGGACATGCAGACGCCATCGCCACCGCACAGTCCTGCTGGCGATGCGGGCAAGATGGCGGTCGATGAGCGCATCGGAAAGAAGCCGACCACTGTGCACTGTCACATCTGTTCAAAAGGTTTCTCCCGACGCAGCCATCTGTCTCGCCACCTGAAACAGGTGCACAAAGCGATTCCGGAGGCCAGCGATGAGGTGCACCGTTGCGAGGAGTGTGGCAAGGACTTTGGCCGTCGCTATCACCTCGAGCGGCACGCCAAAGTCCACCAGGTCAAGCGCTACGAGTGCGTCACGTGCGGCGAGTCGTTCACCGAAAGCGAGGCCCTCGACAAGCACATGATTGTGCACGGCAACACTGTCATGCAGGACTTCCTCTGGATGTGA
- Protein Sequence
- MICYEISVVVTGPGAVLADHLIEFNNNNNNNSSTTNNNTNGGSSSSSSPSDKDRDLVDGQKLRKDVLAPMWDVFEKIWPRKEGANVSCIHNISAYNNIFINHYGYLPKSIGVITFPNFEKNVCEKTMVRVVHRRYVVSKLAFPCSLCGECFKFDQGYERGSTPDSKSYDCNTCGKVFPKRIYWKLHQATHEDVKPFLCRMCGKGFDRKDHLTRHLYTHGTIRPYSCAKCTSSFTRKEHLMRHMEASPACQIEGETVVTPPVVKQFVCTQCEMTFGRREHLTRHMKRAHNIDLLEEADLRKFPCEICHKAFTRREHLRRHQQIHQKENPAALFMEVQATEGVAEVASEDMQTPSPPHSPAGDAGKMAVDERIGKKPTTVHCHICSKGFSRRSHLSRHLKQVHKAIPEASDEVHRCEECGKDFGRRYHLERHAKVHQVKRYECVTCGESFTESEALDKHMIVHGNTVMQDFLWM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -