Canc093403.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418223.1:9724516-9728588[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.097 47 7.1 0.2 1 19 89 109 89 114 0.90 2 13 0.00058 0.28 14.1 0.1 2 23 122 144 121 144 0.96 3 13 3.6e-05 0.017 17.9 1.4 1 23 149 171 149 171 0.98 4 13 5.1e-06 0.0025 20.5 3.0 1 23 222 244 222 244 0.98 5 13 4.6e-05 0.022 17.5 0.3 2 23 249 270 248 270 0.97 6 13 0.0013 0.64 13.0 3.3 1 19 299 317 299 319 0.96 7 13 0.00022 0.11 15.4 0.6 1 23 329 351 329 351 0.97 8 13 0.0038 1.8 11.5 0.7 1 19 478 498 478 503 0.92 9 13 7.3e-05 0.035 16.9 0.2 2 23 511 533 510 533 0.97 10 13 9.4e-06 0.0046 19.7 1.9 1 23 538 560 538 560 0.98 11 13 0.00018 0.089 15.6 0.1 1 23 564 586 564 586 0.98 12 13 5.5e-06 0.0027 20.4 0.3 1 23 592 614 592 614 0.97 13 13 0.04 19 8.3 1.7 5 20 621 636 618 637 0.93
Sequence Information
- Coding Sequence
- ATGGAGTCACCAGGGATGGTTGGAGGAACAAATGAAAATTTAGATTCGCCGTTTGGCTTGAAACAATTGAAAGCACGTCTTGATGATCAACTTGAGGCTCAAAATGAAATAGTGGAAAGTGTACTTTTTGAAGAAGTTGTTACAACGGATATTGCTGAAACGGATATTGCTGAATTAAATGAAGAAAACGAAGAAGATAAGGATGCTGTTAAAATTGATAGACCGACTAAATCAAAGGTGAAAAAGCCTTACCAGAAGAAGAAGTACGTTTGTGGTGTGAATGGTTGTGAAAAATTTTTCAGTGTGTTCAATGAGCTGACCAGCCATGATATTACCGATCACGCCGATGTGCCTTTGGATGTGACGTGCGATGTTTGTGCCAGAATGTTCATTTCCAACGACAGACTGCAGATTCATATAAATAGATGGCATGCGGAGAAAAAGTTCACCTGTGGTTTGTGCGGTTATAAATTCATGTCTAAAGAAACGTTGCGCGCTCATAAACAAAGACATGCTCGTAAGTTTCTGAATCGGCACGCACGTGTTCACGCGACTAATGGTGAAGAAGTGGAAAGTAAAACAACTGTCAACGATTCTAGCAATGATCTGTCAACTCCCAGCACCGTAACTACACATGAAAAAACACAAACGGAAAATAAAAAATATGTGTGTAAAAAATGCAATAAATCGTTTAAGACCCGTTTCCAGCTGAATGGGCACTCCAGAGTTCACTCGGAGAAGCTTGTGTGTGAAATCTGTCCAAAATACTTTTTTAGACCAGAGCCTTTCAAAAGCCACCTTAGGACTCATTCAGTCGTGGAAAATGATTCAAGCAATTATTCTAGCTCCGATGAGTCTCTAGAAGTACCTAAACATTCGTCAGAAATTGGAAAACATGTGTGTGAAAATTGTAACAAACGGTTTGCTAACCGTTTCCAGCTTGCTAGGCACTGCCGTGGTCGGTCGGGTTGTGAAATAAGTGGTCATGAGTGTGGTATTTGCCAGGAAACGTTTACAGACCCCGCAATTTACAAACGCCACATACAGAGACATTCACACCTGAAAAATGAACCGCTTGATGACGAAGACAAAGAGTTTAGTGCAGTTAAGGAGCATGGGGAGGATGGCCATTCTGATAGAGAAGCACCGTTGTCTCCTAGTTCAGAAATGGAGCACAAGGATTCGCCAAGAAAGACCAGATCATGTGCTAGAACAAAAAAGAAAGATGGAGATTCTGTCATTAAAACAATTGAAACAAAATTGATCATTAAAAAAGTGGAAAGTATGGAAAATGAAGTGAAGCCCGAGAATGATGAGTATACGTCAGAAATTGATGAGCCTAATGATGAAAATCATGATTCTTCTGAGAATAATTACGAACCATCCGAATCCAAGTGGAAATTGAATTACCAGCGTTATCAGAAGAAGAATTACGTTTGTGGTGTGAATGGTTGTGATAAAATCTTCAGTCGTTTCTGTGATCTGATGAGACACGACCTATCAGATCACTCCGATGTGCCCTTGGATGTTACATGCAACGTTtgtggaaaaatattcatcaccgacgaccggttacaagttcatgtgaagacttatcatggcgagaaaaagttcacgtgtgatgtgtgcggtgataagttttcgacaaaagattcgttacggtcgcataaacgacgacattctggtagatttgtgtgtcagttctgtggtatggcgacgaattcaaatatggggttgattgagcatatacggactcacacaggtgaacgaccgtttgtttgtgacatttgcggacaaaaatACTCGACTAAAAACGGATTAAATGCGCATAAACGCGGCCATACTAAGGAACATCTCTACAAGTGCAATATATcgttttcgtTTCGTAAGTCGTTGAATAAACATATTTGTCCTGTGGTTAAAGGTGAAAATGTTCGCGAAGAATCATATAACGATAAGCCCTTGTACTGTCAGATGTAA
- Protein Sequence
- MESPGMVGGTNENLDSPFGLKQLKARLDDQLEAQNEIVESVLFEEVVTTDIAETDIAELNEENEEDKDAVKIDRPTKSKVKKPYQKKKYVCGVNGCEKFFSVFNELTSHDITDHADVPLDVTCDVCARMFISNDRLQIHINRWHAEKKFTCGLCGYKFMSKETLRAHKQRHARKFLNRHARVHATNGEEVESKTTVNDSSNDLSTPSTVTTHEKTQTENKKYVCKKCNKSFKTRFQLNGHSRVHSEKLVCEICPKYFFRPEPFKSHLRTHSVVENDSSNYSSSDESLEVPKHSSEIGKHVCENCNKRFANRFQLARHCRGRSGCEISGHECGICQETFTDPAIYKRHIQRHSHLKNEPLDDEDKEFSAVKEHGEDGHSDREAPLSPSSEMEHKDSPRKTRSCARTKKKDGDSVIKTIETKLIIKKVESMENEVKPENDEYTSEIDEPNDENHDSSENNYEPSESKWKLNYQRYQKKNYVCGVNGCDKIFSRFCDLMRHDLSDHSDVPLDVTCNVCGKIFITDDRLQVHVKTYHGEKKFTCDVCGDKFSTKDSLRSHKRRHSGRFVCQFCGMATNSNMGLIEHIRTHTGERPFVCDICGQKYSTKNGLNAHKRGHTKEHLYKCNISFSFRKSLNKHICPVVKGENVREESYNDKPLYCQM
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -