Canc013367.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418217.1:24566166-24568874[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 2.6 1.3e+03 2.6 1.3 3 16 86 99 84 105 0.71 2 13 0.019 9.3 9.3 2.8 2 23 111 133 110 133 0.96 3 13 4.4e-08 2.2e-05 27.0 0.6 1 23 139 161 139 161 0.99 4 13 2.3e-07 0.00011 24.8 2.7 1 23 167 189 167 189 0.98 5 13 8.7e-06 0.0043 19.8 0.4 2 20 196 214 195 216 0.93 6 13 8e-07 0.00039 23.1 0.1 1 23 221 243 221 243 0.98 7 13 0.00082 0.4 13.6 2.9 2 23 250 272 249 272 0.95 8 13 0.00013 0.065 16.1 0.1 1 23 293 317 293 317 0.96 9 13 0.00021 0.1 15.5 1.8 1 23 329 351 329 351 0.99 10 13 0.055 27 7.8 2.1 2 23 358 379 357 379 0.91 11 13 0.002 1 12.3 0.3 5 23 388 406 386 406 0.97 12 13 1.8e-05 0.0089 18.8 0.2 1 23 412 434 412 434 0.98 13 13 0.0028 1.4 11.9 2.0 1 23 440 463 440 463 0.97
Sequence Information
- Coding Sequence
- ATGTGTGTACAGTCCCAGTGGCTCGCTGCGCCCTGTAGTCGTTCATACAACACCGACAGTCGGCACGACTTGAAGGATGTTGTGGCCCCCTCGGCACTAGCACGACAGTCGTGCGTATCCACGACATTTATAACTGAACATGAAGATCCGGCAATAAATAAGGAAGATGTGAGCCATTTGAGCGGTCTGTCGGATTTGAATCTGTTCGGACAGGCTAGCAACGTAAAAGAGCTGTGGATCAATCCGATTCATCTGTGTCCTCTTTGTGGGGAAGTGATTAAGACCTGCCAGCTGCTGTCTCACTCAAAACTGCACAGCGCGGACAAGCTGCAGTGTTTTTTGTGTTTGCGCGAGTTCAAATGCAATTCGAAACTGAAATGGCATATGAAGGTGATTCACATGGGTACCAAGGAGTATGTGTGCGAGTTTTGTAGCAAGATATTTTCGCGCCAGGGTAATCTCACCGAACATATGAGGATTCATAACGGAGACAAAAAGCATAAATGTACAGAGTGTCCGAAAATGTTTTCAACTAGAAGTATGTTGCTACGTCATTTGAAAATTCATACGGGTGAGCGCGATTGGATTTGTCCCGTGTGTGGGAAAGGGTTCGCTCAAAAGGGAAATCTTATGAAGCACAAGTGTTTTCTTTCGGAAAAATTTGTGTGTGAAGTTTGTAATAAGTCGTTTAAAGGTAAGTATGCATTGGCTGTACATATTAAGATACATGGGGAAAGGAAGGAGTTGAACTGTGAGTATTGTCCGAAAACGTGTTTCAATATATCGAAATTGAAGGAGCATCTAAAGCGTATGCACCCTGGGATGCCGGCGCCTGATGGTACGATCCCCAAGGAGCGTTTGCCAGCTGAGAGAAAGTTTAAATGTGAGATTTGTGGGGACAAGGCGTACACAAGTAAAGCGGCCCTCGAGTATCATATGAACGGTGTGCATCCCGACAAAGTTGACGACAATGTTCAACATTTTTTCAAATGCGAAGTATGCAACAAAACACTGACCGGTCGTCAGTCGTACGACCGACATTTGAAAACGCATTCCGCCGAACGCACCTTACAGTGTCGACTGTGTGACAAAATGTTCGCAACAAAAATGTGTCGCTCCATTCACGAACAACTGCACAGCAAAGACAACAAGTTCGTGTGTAAGTGTGGCAAAGGGTTTCCGATCAGGGCCTATCTGAAGAGGCACGAGAAGACGCATGCTAGTGAGCAGTCGTTTCAATGTGCCACTTGTGGTGAAATGTTCGTCACCAACACTCGTCTCCAAATACATTTGGAGACGCATGCTTCTACGAAAATGTACAACTGTCATATTTGTGAGAGTAGTTTTTCGGAGGTGCCACGGTTGAGGAGACATTTACGAAATAAGCATGGTGTTAGAAGGAGGCCAGGAATCAGCGCTTCTAAGGAGGATATATTGTTCTGTCCACTTTATTTTAATCTGCATAAACAGTGGCAGAATAATGGAAAAACAATTGCAAATAATTGGAGATTTTCAACTTTTTCCTAG
- Protein Sequence
- MCVQSQWLAAPCSRSYNTDSRHDLKDVVAPSALARQSCVSTTFITEHEDPAINKEDVSHLSGLSDLNLFGQASNVKELWINPIHLCPLCGEVIKTCQLLSHSKLHSADKLQCFLCLREFKCNSKLKWHMKVIHMGTKEYVCEFCSKIFSRQGNLTEHMRIHNGDKKHKCTECPKMFSTRSMLLRHLKIHTGERDWICPVCGKGFAQKGNLMKHKCFLSEKFVCEVCNKSFKGKYALAVHIKIHGERKELNCEYCPKTCFNISKLKEHLKRMHPGMPAPDGTIPKERLPAERKFKCEICGDKAYTSKAALEYHMNGVHPDKVDDNVQHFFKCEVCNKTLTGRQSYDRHLKTHSAERTLQCRLCDKMFATKMCRSIHEQLHSKDNKFVCKCGKGFPIRAYLKRHEKTHASEQSFQCATCGEMFVTNTRLQIHLETHASTKMYNCHICESSFSEVPRLRRHLRNKHGVRRRPGISASKEDILFCPLYFNLHKQWQNNGKTIANNWRFSTFS
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00857881;
- 90% Identity
- -
- 80% Identity
- -