Canc079154.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418216.1:97908133-97914890[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 8.4e-06 0.0041 19.9 1.9 1 23 289 312 289 312 0.97 2 13 0.0021 1 12.3 0.7 1 23 317 340 317 340 0.95 3 13 0.00051 0.25 14.2 2.7 1 23 345 370 345 370 0.98 4 13 1.2e-05 0.0058 19.4 1.8 2 23 374 396 373 396 0.96 5 13 0.00016 0.08 15.8 0.1 1 23 401 424 401 424 0.97 6 13 5.2e-06 0.0025 20.5 2.9 2 23 430 452 429 452 0.97 7 13 1.4e-05 0.0066 19.2 3.7 1 23 457 480 457 480 0.95 8 13 4.5e-05 0.022 17.6 1.8 1 23 485 508 485 508 0.95 9 13 0.004 1.9 11.4 0.8 1 21 513 533 513 536 0.94 10 13 8e-05 0.039 16.8 1.0 1 23 541 564 541 564 0.93 11 13 3.3e-05 0.016 18.0 0.5 1 23 570 593 570 593 0.94 12 13 1.1e-05 0.0054 19.5 1.3 1 23 598 621 598 621 0.98 13 13 0.00053 0.26 14.2 3.4 1 21 626 646 626 647 0.95
Sequence Information
- Coding Sequence
- ATGGGGTTCATGAGCCCCCCCTCAACGGATATTCACTGGAGAAGGGGCGGGAAGGATGTTAGATTACGCAAAAAAAGGTCATCAAACCCCATTTGTGGACCCCCCCCTCCCCCCAACCTCCAGACTCCCGAGTTAGGATCGCTCCTGGAGTCTGATCAAATCTACAAGGAAGAAGAAACCAGTCAGTCGAATCAATTCAAATTCTCTTGGGATTCTACCTTGATGAGAAACACACCTGGGCAGCTTTACAAAAGGCTAAGTAGGGTTATTTTCTTACTAAGGAAACTGGTAGATTGTCTGCCTGATGGCTTTGTCCATCAGGCATATTTTGCATTTCTACACAGCCACATTAGACATGGCATAATATTATGGGGACACCACTCTGCCAGTTCAGATTTAGAGATTTTGCAGTGGAGGCTCTCCAAGGTGAAGAATTCCTTTCCAGTGCTGACCTCAAAAATGTTTAATTATTTGCCACCTTTAGTGAGGGACTGTCTGAGCATCAAAGATGAGCCAGACTCAGACTATAATGAAGATATTGAACCACCTAATGAATATAATGATGATTCAACTAACAATGGAAGAGAAACAACAAATAATGAAATTACTAATAGAAGATGCAGTTTGCGTTTGAAGAAAGCAATTATTCCAGACATTGGAAATGTAAAGATGAAGCATCATTCAAAAGAATTGAAAAATAAATCAAAAAATCAAGTCATAGGAAATGAGAATTCTTCAAATGCTGCTACAACTTTCATTTTAGGGAAATCCAACATGAGTGTGAACATTGGCGATTTTTTAACAAAATTCTCAGACGAAGCTTGTGTAGGTCAGCTTTTAGGTCCTGATAGCCAGCCAGTGGAATATGAATGTGATATGTGCAATCAAGGTTTCAGAAGCAAGAATCATCTTCAGGAGCATATCAAGCTGACACACTGTGATGTTGTCTATGAATGTGGTTTTTGTCAAGAGCTATTCAAAAACTGTGAAAATTTAGTAAATCATGTTGATTCTGCACATTTAGGGTTAAAATTCAAATGCTCATTTACTTATTGTAACGAAAAGTTTACTCAAGAATCTGAAAAAACTATGCACATGAAAAGAGTGCACAATTTGCTGGAGTGTTCGCAATGTAATAAGACATTCAGACATGCAGCAGGACTGCTGTCACATACTCGGACTTATCATTTGGGCATGAGGTATGTGTGTCTCATTTGTAATGTCACTTTTGGACAAAATGGTGCATTGAAGCAGCACACTGATACAATCCATAAAAAAGTGAGAGTTCGTTGTAAGGTGTGCAAAAAGAAATTCACTAGTAAGGCTCATGTGAGAATCCATATGAGATCAGTACACTTGAAAATAAAACATTTCTGTGAAACATGTCATAAAAGTTTTTCACAGAAAGGCGCCTTGAAGATCCATATTGACACAACTCATAATGGGTTGAAATTCACATGCGAACACTGCAATGAGTATTTTAAAAGTAAGAAGTCTCTAGCAAGTCACATAGAATTAATTCATGAGGGTAAAAGGTACACGTGTGATATTTGTGGCTTGACATTTGGTTGGAAAGCGAGCCTAAAACAACATCTGCAATGTATTCACCAGGGTAAAAGGTTCACTTGCAAAGAATGTGGAAAGTCTTACAGAGAAAAGCAGCGACTCAACCAACATACTGCTCTAGTCCATCTTGGTATACACAAATACAGGTGTGAGCTGTGCAATGTTAACTTCAGCCAGTCAGGTAACCTGAAACAGCACAATCTTTCAGTCCACATTGGTCGAAGATTTGAATGTGATTTTTGTGCACAGAAATTCAAACAGAAGGATGGACTTAGAAAGCACATGGAAACTTCTCATCAAGCCATAATTTATACATGTACTGAATGCAATAATACTTTTACCAAAAAGAAAGCATTAAAACTTCATCAATGTTCTTCAAAACAAAGCGAAGAGAATACTTAA
- Protein Sequence
- MGFMSPPSTDIHWRRGGKDVRLRKKRSSNPICGPPPPPNLQTPELGSLLESDQIYKEEETSQSNQFKFSWDSTLMRNTPGQLYKRLSRVIFLLRKLVDCLPDGFVHQAYFAFLHSHIRHGIILWGHHSASSDLEILQWRLSKVKNSFPVLTSKMFNYLPPLVRDCLSIKDEPDSDYNEDIEPPNEYNDDSTNNGRETTNNEITNRRCSLRLKKAIIPDIGNVKMKHHSKELKNKSKNQVIGNENSSNAATTFILGKSNMSVNIGDFLTKFSDEACVGQLLGPDSQPVEYECDMCNQGFRSKNHLQEHIKLTHCDVVYECGFCQELFKNCENLVNHVDSAHLGLKFKCSFTYCNEKFTQESEKTMHMKRVHNLLECSQCNKTFRHAAGLLSHTRTYHLGMRYVCLICNVTFGQNGALKQHTDTIHKKVRVRCKVCKKKFTSKAHVRIHMRSVHLKIKHFCETCHKSFSQKGALKIHIDTTHNGLKFTCEHCNEYFKSKKSLASHIELIHEGKRYTCDICGLTFGWKASLKQHLQCIHQGKRFTCKECGKSYREKQRLNQHTALVHLGIHKYRCELCNVNFSQSGNLKQHNLSVHIGRRFECDFCAQKFKQKDGLRKHMETSHQAIIYTCTECNNTFTKKKALKLHQCSSKQSEENT
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -