Canc059292.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418225.1:33219164-33233220[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 1.9e-05 0.0094 18.7 0.4 1 23 227 249 227 249 0.98 2 14 4.5e-05 0.022 17.6 4.7 1 23 255 278 255 278 0.96 3 14 4.2e-05 0.02 17.7 0.1 2 23 287 308 286 308 0.96 4 14 0.00055 0.27 14.1 1.1 1 23 314 336 314 336 0.96 5 14 0.00014 0.068 16.0 3.3 1 23 342 364 342 364 0.97 6 14 6.8e-06 0.0033 20.1 0.6 1 23 369 391 369 391 0.97 7 14 7.3e-05 0.036 16.9 1.1 3 23 422 443 420 443 0.94 8 14 0.014 7 9.7 1.3 1 23 450 477 450 478 0.91 9 14 1.2e-06 0.00058 22.5 1.7 1 23 485 508 485 508 0.97 10 14 4.4e-05 0.022 17.6 5.3 1 23 520 542 520 542 0.98 11 14 3.8e-05 0.018 17.8 3.4 1 23 558 581 558 581 0.95 12 14 9.3e-05 0.046 16.6 0.8 2 23 596 617 595 617 0.96 13 14 0.00015 0.075 15.9 9.9 1 23 623 645 623 645 0.99 14 14 5e-05 0.024 17.4 6.6 1 23 651 674 651 674 0.98
Sequence Information
- Coding Sequence
- ATGAATAATATTCTGTTCTACATTTATATTTACCAGCATATTTCACTATTGATAACAAAGCACAAAGAAACAGCATCAGTTAAGCGTTTTGAATGCTTTCAGGTGATCTCTGATAGACTGAAAACTACTGAACATGTAAAAGCATTGCCGAATCATGCCGACTATGCCGCTTGTGACAATTTGGAAAATTTCAATAAGCTACCCAATAGCAGTAACGATGATTTGAGAGATTTACTGCCGGCAGAACAACTTGGAAGCTCCGACCAGCAATTGATCACCAGTCATGCAGACGGCAACGCAAGAACTGAGAATATCATTTCTTTCGAAGATTCTCTGATGCCTGTTGCTGAATCCGAACCTTTTGTTAGTTCGAGAATCGATGAAAAAGTAACAAACAATAGTAACGAATACGAACCTAGTCTCACACCAGGTGAACAGCTTATATCGTCAGCGATTGATGGTCTGGTTCAGGAAGTGTCTCATAATGATGATAATGACGATGACTTGAACAATGATGAACTAAATTTTAGACCTATTGAAGTACAGGAAGACACTCCGTTGAAAACTATTGAGGCATCTGTTCATGATCAGTGGAGTGAGAGCAATACTGAAGAGGTGAGAAGTGATGTAAGTATTTACCAAACTGCCAACAAAATTCAATCCGAAGAAAAAGGAAGTTTTACCTGTGCTCGCTGTGGAAAAGTACTGTCTAGTCGGACGAGTTTATTAAAACACATTAATATACATTCTGGTATCAAGCCATATTGCTGTGAACATTGCGGAAAATTGTTTACAACTAACACAAATTTATCAGCGCATCTTACTCGTCAGCACAATCTGAATACAGAATCGGCTAAATCGTGTTCTATATGTGGTAAACTGTTTGTTCGACTGTCCGCACTGAAACTGCATCTGGCTGTGCACCGTGGTTTCAAGCCCTTCAAATGTTCCATCTGTGATAAAGCATTTGCTCAAAAGGTCACTCGTGATACTCATTTTCTCACACACACAAGAAATTACTCGTTCTTCTGTAAAATATGTCCGAAACGATTTCCCACCAAGTACAAGTTGTCGTTTCACATGAAAACACACGGCAAACCTCAGTATCCGTGCTCTGTGTGTGATAAACAGTTTGCCACCAAACAATACTTGAAGGCCCACTATGACTCTCACAATATCTCGCAAAGTGAGGCAGCTCCCTGTCGATTGGACACCATTTCAGACAATTCACGGCCACAGGTGGTAGAAGCACCTCAGATAGCTTGTTCGCAGTGCGATTTCACTTTCAGATCACAACGTGCGCTGACCAGACATACGAAAGCAAAGCATGAGCACCTCATACAGTGGTTCTATTGCAAAGTTCCCGACTGTCCCAGACCCACTAAAGCGTTTCCAACCAAGTACCAACTCACTAAACACAACGATCGACATCACAGCGAACAGAGAAAGAAATTCTCGTGTAAAACGTGCGGCAAAAGTTTTGTAGAAAAGAATTCGCTAATAAGACACCAACGGCAGAACCATATGGTGGGATTGTCGCTGCAAGAGTTGAAACCATATTCGTGTCATGTCTGCTCCAAGCGTTTCTTCACCAAGTCAAAAATGACAGTACATATGAGCACACATGCCGAGGTATCAATCTTTACTATCATTACAACAATAACCAAATACTTCAGATGTGAATTGTGTACAAAAGCATTCTACCGTAAAGATTCGCTGAAGAAGCATTTCAAAGAAAGACATTCAACTACTTTGTCATCGTCAGAACCCAGCCAAGCTGTTCTCTCTTGTTCGCAATGCGGAAAAAACTTCAAAAGTCAATCAGCATTAGTCTTTCATCTGCAAACTCACAATGGAGATTTCAAGTACCAATGTGACAGTTGCAACAAATGTTTCGTGCGCAAATGTCACTACGAATCGCACATGCGTTCACATTCGGAGGACAGACCATTCAAGTGTTCAACGTGTGGCAGGTGCTTCAAGGAGAAAAAGCACTGGAAAGTGCACTTGAGGCGGGTGCACACTAACGAAATCACGATGCAATCGCTGCTCGATTCGATTACCAGCGAAGATGCGCTCTGCTCTGACAATAATGACACTTTTGACATGATGCAGCATCCGGTGGCTATGCCTGCTTTACCTTTATCTCAGACTAACGACTGTCTCAGTACCATCACTATATCAGAGTCCTATATGCTGAATGGTAGTATAGAGTTGCAGATACCAAGGGAGCACATAAACGCTCTCCTGGGCCCTCTCTGTAAGGGTGACCGATCTGAATTGGCCAGCAAAAAACAGTTCTCTGCTCGTTCGCCATTGTTGAGGTTATGTGAATTTCACGGATTCCGTGATCCACCAATGAGAAGACATCAAAATCAAAACAGAAGTGTAAAGAAAACAGCTGGCGAGCGTAAAATACTTTACCGCTTGCGGAGCAGTAAAGAGGTATTTTACAATTAG
- Protein Sequence
- MNNILFYIYIYQHISLLITKHKETASVKRFECFQVISDRLKTTEHVKALPNHADYAACDNLENFNKLPNSSNDDLRDLLPAEQLGSSDQQLITSHADGNARTENIISFEDSLMPVAESEPFVSSRIDEKVTNNSNEYEPSLTPGEQLISSAIDGLVQEVSHNDDNDDDLNNDELNFRPIEVQEDTPLKTIEASVHDQWSESNTEEVRSDVSIYQTANKIQSEEKGSFTCARCGKVLSSRTSLLKHINIHSGIKPYCCEHCGKLFTTNTNLSAHLTRQHNLNTESAKSCSICGKLFVRLSALKLHLAVHRGFKPFKCSICDKAFAQKVTRDTHFLTHTRNYSFFCKICPKRFPTKYKLSFHMKTHGKPQYPCSVCDKQFATKQYLKAHYDSHNISQSEAAPCRLDTISDNSRPQVVEAPQIACSQCDFTFRSQRALTRHTKAKHEHLIQWFYCKVPDCPRPTKAFPTKYQLTKHNDRHHSEQRKKFSCKTCGKSFVEKNSLIRHQRQNHMVGLSLQELKPYSCHVCSKRFFTKSKMTVHMSTHAEVSIFTIITTITKYFRCELCTKAFYRKDSLKKHFKERHSTTLSSSEPSQAVLSCSQCGKNFKSQSALVFHLQTHNGDFKYQCDSCNKCFVRKCHYESHMRSHSEDRPFKCSTCGRCFKEKKHWKVHLRRVHTNEITMQSLLDSITSEDALCSDNNDTFDMMQHPVAMPALPLSQTNDCLSTITISESYMLNGSIELQIPREHINALLGPLCKGDRSELASKKQFSARSPLLRLCEFHGFRDPPMRRHQNQNRSVKKTAGERKILYRLRSSKEVFYN
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -