Basic Information

Gene Symbol
-
Assembly
GCA_948455865.1
Location
OX418223.1:17653628-17660053[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 50 0.011 5.3 10.1 3.4 1 23 141 163 141 163 0.98
2 50 5.3e-05 0.026 17.4 1.0 1 23 168 190 168 190 0.98
3 50 9.9e-06 0.0048 19.6 0.6 1 23 195 217 195 217 0.97
4 50 6.4e-06 0.0031 20.2 0.9 1 23 222 244 222 244 0.99
5 50 0.00045 0.22 14.4 4.9 1 21 249 269 249 271 0.96
6 50 1.4e-06 0.00069 22.3 0.6 1 23 276 298 276 298 0.98
7 50 5.8e-05 0.028 17.2 3.2 1 21 303 323 303 325 0.96
8 50 2e-06 0.00099 21.8 2.0 1 20 330 349 330 351 0.95
9 50 0.033 16 8.6 3.3 2 23 358 379 357 379 0.96
10 50 2e-06 0.00097 21.8 0.6 2 23 385 406 384 406 0.96
11 50 0.00043 0.21 14.5 0.3 1 23 411 433 411 433 0.97
12 50 4.5e-06 0.0022 20.7 2.0 1 23 438 460 438 460 0.98
13 50 2.9e-06 0.0014 21.3 1.6 3 23 467 487 466 487 0.97
14 50 1.6e-05 0.0076 19.0 0.7 2 23 493 514 492 514 0.95
15 50 2.2e-06 0.0011 21.7 0.3 1 23 519 541 519 541 0.98
16 50 0.00093 0.45 13.4 0.3 1 20 546 565 546 567 0.95
17 50 0.0069 3.3 10.7 5.4 1 23 573 595 573 595 0.97
18 50 2.9e-05 0.014 18.2 0.2 2 23 601 622 600 622 0.94
19 50 9.8e-07 0.00048 22.8 0.6 1 23 627 649 627 649 0.98
20 50 5.5e-06 0.0027 20.4 1.6 2 23 655 676 655 676 0.97
21 50 2.8e-06 0.0014 21.3 1.3 1 23 681 703 681 703 0.98
22 50 2.4e-06 0.0012 21.6 0.3 1 23 708 730 708 730 0.97
23 50 5.7e-05 0.028 17.2 1.7 1 20 735 754 735 756 0.95
24 50 0.00014 0.067 16.0 2.1 1 23 763 785 763 785 0.98
25 50 3.7e-05 0.018 17.8 0.5 2 23 791 812 790 812 0.95
26 50 3.5e-06 0.0017 21.1 1.5 1 23 817 839 817 839 0.98
27 50 9.9e-05 0.049 16.5 0.1 3 23 846 866 844 866 0.96
28 50 0.0011 0.51 13.3 0.2 3 20 873 890 872 892 0.94
29 50 0.13 61 6.7 2.0 1 23 898 920 898 920 0.95
30 50 4.8e-06 0.0023 20.6 1.9 2 23 927 948 926 948 0.96
31 50 2e-05 0.0096 18.7 5.7 1 23 953 975 953 975 0.98
32 50 0.007 3.4 10.7 3.7 1 23 985 1007 985 1008 0.93
33 50 0.00018 0.087 15.7 0.4 1 23 1015 1037 1015 1037 0.94
34 50 0.00072 0.35 13.8 0.9 2 20 1047 1065 1047 1066 0.95
35 50 0.081 39 7.3 2.4 1 20 1074 1093 1074 1097 0.90
36 50 0.0004 0.2 14.6 0.7 2 23 1103 1124 1102 1124 0.96
37 50 1.7e-05 0.0083 18.9 0.3 2 23 1130 1151 1129 1151 0.96
38 50 0.0078 3.8 10.5 1.2 2 20 1157 1175 1156 1177 0.92
39 50 0.004 2 11.4 4.3 1 23 1183 1206 1183 1206 0.95
40 50 2.8e-05 0.014 18.2 2.7 2 23 1212 1233 1211 1233 0.95
41 50 3.4e-06 0.0017 21.1 0.1 1 23 1238 1260 1238 1260 0.96
42 50 1.9e-05 0.0094 18.7 1.5 1 20 1265 1284 1265 1286 0.95
43 50 0.0036 1.8 11.6 1.9 2 23 1294 1315 1293 1315 0.96
44 50 0.00087 0.42 13.5 1.3 2 23 1321 1342 1320 1342 0.95
45 50 0.0013 0.64 13.0 1.3 1 23 1347 1369 1347 1369 0.95
46 50 1.4e-05 0.0067 19.2 0.8 1 23 1374 1396 1374 1396 0.97
47 50 0.0012 0.56 13.1 0.3 2 23 1403 1424 1403 1424 0.97
48 50 0.0089 4.4 10.3 0.7 3 23 1527 1547 1526 1547 0.96
49 50 3e-05 0.015 18.1 5.3 1 23 1551 1573 1551 1573 0.97
50 50 0.00026 0.13 15.2 0.3 1 23 1578 1600 1578 1600 0.96

Sequence Information

Coding Sequence
ATGGGCTCAAGCAACCACTACAATCATAACCCTGCATACATGGATTACGGCTCAAAAAAAATTAAAATGGAGGAAGAAGAAGAGCCAGGAGAAATGATGATCAAGACTGAACCAGATTGCTATGACGATGACTATGGGAACGGTGAATACCACGGGGTTCCTTGTGAAACTGAAATTAGAGAGGTCGAATGCCAATCATTCCCAGATTATAAGAGAGATATGCAGAAACAGCCGGACAACAGTCACAACATGCACTCGACAGAAATAGTTGTCTCATTGAATCCAGCGGAGCACTATCCATCCGTATATCATCAGAGCATGAAGCATGAATCAAATATGTTTATGAATGGTTGGAATGATGGCTTCCATGATAGGAGTAAATTTAGTTCAAATTTGCCACGGATTGGCAGCAGAAAACGCTATAGATGTCGACTTTGTTGCAAGAGTTTCACGACAATCTGGTACTTGAAAGTTCATATGGACAGCCACAAAGGGAAGGAATACTCTTGCGACGTTTGCCAGAAAACCTTCACTTCCAGACTCTCGTACACAGTGCATCTGAACATTCATCAAGGTAAAGAGTTCTCTTGTGAAAAATGCAATAAGACGTTTACCACAAGAGCAGGTTGGAAAATTCATATGGACATCCACGAAGGTAAAACTTACCAATGTTCTGTCTGTAATAAAACATTGACTACGAAGAATGGCCTGAAGTTGCACATGAATATCCACTTGGGCAAACAGTTTACTTGTCAGTTGTGTAATAAGAGTTTTGCAACTAAATGGTATTTCAGGGATCATATGCGTTGCCATCAAGGTATAATGTACACGTGTAATCTATGTGGCAAAGGATTCACAACCCGAATGAGTCTGAAATTGCACATGGATGTTCATGAAGGCAAACAATACACATGTGAGGTGTGCAACAAATCGTTCTCCGCAAAGAGCACACTAAAAATGCATATGAACTGTCACAGCGGCGAGCTGCATACCTGCACCTACTGCAATAAGAGCTTTACTACCAAGTCCTATCTGAAGGTGCATCAAGAAGGCAGTGAGGAGGCAAACATCACCTGCTACTTCTGTAGCGAGTCGTTCACAAGAAAGTGTGTGTTCAAAGCACATCTTGAGAGGCACATAGGCGAACAGCTAACTTGCAAAATATGCAACAAAAGCTTTACTACAAAGGCTGGCCTAAAACTGCATATTGACATGCACGAGGGCAAGATCTATCCCTGCGAACTGTGTGAACGCAGTTTCTCTTCTAAGGCTGGCTTGAAATTTCATATGGACATGCATGAAGGCAAAGAGTACCCATGCGAATTGTGCAACAAAACATTCACTACAAAATGGTACCTTACTGCTCACCTTCACAGTCATGAGGGCAATCAGCCGATATGCAAGTTATGTAATAAAACATTCACAACAAACTATAGTCTGAAACTTCACATGGAAATGCATGCAGGAAAAGTACTCAGGTGTGAGCAGTGTGATAAAAACTTTACCACAAAGACTGGACTGAAGTTGCATATGGAAGCGCACGAAGGTAAGCGATATCCCTGTGGTATTTGTAACAAAACATTTACTGCTAGAAGTTCTTTGAAAATTCATTTGAACATGCATACTGGTGAGTCATTCGCATGTGAGTTTTGTCTAAAACGTTTCTCTACAAAGGCCTATCTGAAAATTCATCAGGATGCCAGTGAACAGAAGTTTTTCTCTTGCTACTTCTGCAACGAGACATTCAACAGAAAGTGTTCGTTCAGAGTGCATCTGGAAAGTCACGGCGGTGATCAACTGACATGCAAGATCTGCGAGAAAGTCTTCACCACCAAAGTAGGCCTCAAACTGCATATCGATGCTCATGAAGGTAAGGAGTACTCTTGCACTATCTGCAACAAGAGTTTTGCTTCGAAATGGTACTTAAATGTACACATGGACAGTCATGATGGAAAACAGCCGACGTGCGAGATTTGCAAGCGCTCATTCACCACCAATTACAGTCTTAAAATGCACATGGACAGTCACGAGGGCAAAGGCTACTATTGTGAAATTTGCAACAAGAACTTCACAACCAAAACGGGCCTCAAATTGCACATGGACAGCCATGAAGGCAAGCGCTATCCTTGTGAGTACTGTGAGAAATCGTTCACTGCCAAAAGCTCTTTGAAAATTCACATCAATGGACATTCGGGCGAACAGTACACGTGTGACTTTTGTCTGAAGAGTTTCACAACCAAGTCCTACCTGAAGATACATCAGAGCAACAACCAGGAAGAGAAGCATTTCAAATGCGAACTATGTGATGCTACGTTTACTCGAAAATGCGCGCTACGTGTGCATTCAGAGACTCACGATGGCGACCAGCTCAGCTGCAAAGTTTGCGACAAAAGGTTCACCACTAGAGTTGGCCTCAAATTACATCTAGACATACATGAAGGCAAACAGTACACCTGCGAGCTGTGTGACAAATCATTCTCAACCAAATGGTACTACAAAGCTCATTTGAGTAGTCATGAGGGCAACCAGTTAGCCTGTGAAGTTTGCAATGAAAATTTCACCAATAAAGCTGACCTAAAATTGCATTTAGAAATTCACGGTGGCGATAAGAATATTTGTGAATTTTGTAGCCGAAGTTTCTCATCGAAAGGCTACTTGAGAATGCATCAAGATGTCAATGAAGAAAAGCCTTTCGCCTGCACAATTTGCGAAGACAAGTTCACTTCTCGATGTGCGTTCAAAATGCACCAAGAAGGCCATGCAGAGAAAAATGAAATAAAATGTGACATTTGCAAAAAGACTTTTAACACTGAATCCTATTTAAAGCTGCACATGAAGTTTCACAAGCGTAGGCGGCACACTTGCAGTGTGTGTAACAAGAGTTTCATCAAGAAGCGCCATCTAGAGTCACACATGAACTCTCACAATCAGTCTGTTGAAGAAGAGAAACTTCATCCTTGTAGTTCGTGTGATAAATCATTCGCAGATGAGAACAAATTGCGAATGCATACATACAACCACCACAAAGAAGAGAAAAAGATTTACAAATGTGAAGTTTGCGATGAGACATTCACTTCTCGCGAAGGTTTTAATTTACATGTTTATGGTCATGGTGATGATTATGTATTTGAAAAGAATACCTGTGAGCATTGTAATCGCGGGTTTACATCTAGGACAGCATTAAAAACTCACCTTGATGCAAGTGATGATTCAGTAACATTTACCTGTGAATTTTGTAACATGACATTTGAGAAGAAGTGTGCTTATAGAGTGCATGTGGTAGATAACCATCAAGAAGAGAAGCTGACGTGTAAAGTGTGTAATAAGGTGTGTAACTCAGCTCCGGCACTCAAATTGCACATGGAGTATCATGAGAACAAAGAGCTGCCCTGTGAGCTATGTGAGAAAGTATTTCCAACCAATAATACCCTGAAAATGCACATGTCCACACATGACGCAGAAGAAAAGACTTGCGAATTTTGTAACCGAACGTTCACTACAAAATCATACAAAGCAACCCATCTGGAGAACAATGAGGAAAGTAACTTCGATTGTCAGTACTGTTCGGAAAAGTTTACAAGACGATGTGCTTTCAAAGCTCATCTGGAGAGATTTCATGATGATGAGCAGCTGATTTGCAAGCAATGCAACAAAACGTTTGTAACAAAACACGGTCTAAGACAGCACATGGACAACCACGAGGGTAAGCGGTACCCTTGCACTGTTTGTGATAAGACATTCTCAGCAAAAAGCTCTCTGAGGATACATATAGAAGGGCACTCGGGCGAACAGCACACCTGTGACTTCTGTCAGAAGAGTTTCACCACAAAGTCCTACCTGAAAGTGCATCTGGAAGGAAACGAGGAGGAAAAGGAGCTCAGTTGCGATTATTGCGATGAAACTTTCACAAAGAAATGCGTGTACAGAGTTCATGTCGAGACGCATAACGGAGATGACTTGAATTGCAAGCAGTGCAGTAAAACTTTCACTTCGAGGCTTGGCCTCAAATTACACCTGGACATGCACAAAGGCAAACAGTACACGTGCGAGGTCTGCAACAAAGTGTTCAACTCAAAGAATGGACTCAACTTCCATAAGGACACGCATTCGGGCAAAGAGTATATCTGTGAAATCTGTAGCAAATCATTTCCAACCAACCGCCGTCTGAAACAGCATATGGACTCGCACATAACCAAACTATCCAATTCCTGCGATTTGTGCAATCAATTGTTCCCATCTAAAGCAAGTTTGAAATTGCATATGGTAACGCATGAGGGTGTCAAGAACGATGATGACGACGACGATGACGACTCCAAAGACAACGAAACGTGTTTCATCAAAGAAGAGGACATCTCTTTGGATGCGTTCGAATCAGAGTTGATGGAAGATAACGAGATCAAGATGGAGGAGCCAGACTGCCAAGTCACGGAAAATACCGACCCGACTGCTAGTGAAAAGCTGGAAATTATTATCGAAAACTGCAAGTCTTTGTCGTCCAACCAAGAAGCTCAAGGTCAGGTAAGTTCTACAAACAACTCGGACAGTATTGGTAGCAATGGCCATGATAATCAAAATGCATGTGATTCGTGTGACAAAAAGTTTGAATCTTTCGATGCATTGAAATTGCATAAATACAGTCACAGCTCTGAGCATGTGTGCCACATTTGTCAAAAAACGTTCAGCTCGAAATTCTATTTGAAGGTGCATGTGAACAGTCACGAGAGTAATTTGTTTGCTTGTGACATTTGCAAGAAAGAGTTTATTACAAAAGAGTCTTTAGACGAACACACAAAAGGCCATGATATATAA
Protein Sequence
MGSSNHYNHNPAYMDYGSKKIKMEEEEEPGEMMIKTEPDCYDDDYGNGEYHGVPCETEIREVECQSFPDYKRDMQKQPDNSHNMHSTEIVVSLNPAEHYPSVYHQSMKHESNMFMNGWNDGFHDRSKFSSNLPRIGSRKRYRCRLCCKSFTTIWYLKVHMDSHKGKEYSCDVCQKTFTSRLSYTVHLNIHQGKEFSCEKCNKTFTTRAGWKIHMDIHEGKTYQCSVCNKTLTTKNGLKLHMNIHLGKQFTCQLCNKSFATKWYFRDHMRCHQGIMYTCNLCGKGFTTRMSLKLHMDVHEGKQYTCEVCNKSFSAKSTLKMHMNCHSGELHTCTYCNKSFTTKSYLKVHQEGSEEANITCYFCSESFTRKCVFKAHLERHIGEQLTCKICNKSFTTKAGLKLHIDMHEGKIYPCELCERSFSSKAGLKFHMDMHEGKEYPCELCNKTFTTKWYLTAHLHSHEGNQPICKLCNKTFTTNYSLKLHMEMHAGKVLRCEQCDKNFTTKTGLKLHMEAHEGKRYPCGICNKTFTARSSLKIHLNMHTGESFACEFCLKRFSTKAYLKIHQDASEQKFFSCYFCNETFNRKCSFRVHLESHGGDQLTCKICEKVFTTKVGLKLHIDAHEGKEYSCTICNKSFASKWYLNVHMDSHDGKQPTCEICKRSFTTNYSLKMHMDSHEGKGYYCEICNKNFTTKTGLKLHMDSHEGKRYPCEYCEKSFTAKSSLKIHINGHSGEQYTCDFCLKSFTTKSYLKIHQSNNQEEKHFKCELCDATFTRKCALRVHSETHDGDQLSCKVCDKRFTTRVGLKLHLDIHEGKQYTCELCDKSFSTKWYYKAHLSSHEGNQLACEVCNENFTNKADLKLHLEIHGGDKNICEFCSRSFSSKGYLRMHQDVNEEKPFACTICEDKFTSRCAFKMHQEGHAEKNEIKCDICKKTFNTESYLKLHMKFHKRRRHTCSVCNKSFIKKRHLESHMNSHNQSVEEEKLHPCSSCDKSFADENKLRMHTYNHHKEEKKIYKCEVCDETFTSREGFNLHVYGHGDDYVFEKNTCEHCNRGFTSRTALKTHLDASDDSVTFTCEFCNMTFEKKCAYRVHVVDNHQEEKLTCKVCNKVCNSAPALKLHMEYHENKELPCELCEKVFPTNNTLKMHMSTHDAEEKTCEFCNRTFTTKSYKATHLENNEESNFDCQYCSEKFTRRCAFKAHLERFHDDEQLICKQCNKTFVTKHGLRQHMDNHEGKRYPCTVCDKTFSAKSSLRIHIEGHSGEQHTCDFCQKSFTTKSYLKVHLEGNEEEKELSCDYCDETFTKKCVYRVHVETHNGDDLNCKQCSKTFTSRLGLKLHLDMHKGKQYTCEVCNKVFNSKNGLNFHKDTHSGKEYICEICSKSFPTNRRLKQHMDSHITKLSNSCDLCNQLFPSKASLKLHMVTHEGVKNDDDDDDDDSKDNETCFIKEEDISLDAFESELMEDNEIKMEEPDCQVTENTDPTASEKLEIIIENCKSLSSNQEAQGQVSSTNNSDSIGSNGHDNQNACDSCDKKFESFDALKLHKYSHSSEHVCHICQKTFSSKFYLKVHVNSHESNLFACDICKKEFITKESLDEHTKGHDI

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00857849;
90% Identity
iTF_00857849;
80% Identity
-