Canc016008.1
Basic Information
- Insect
- Conomelus anceps
- Gene Symbol
- -
- Assembly
- GCA_948455865.1
- Location
- OX418217.1:53058383-53062125[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 2.3e-07 0.00013 24.0 0.0 2 28 19 45 18 50 0.96
Sequence Information
- Coding Sequence
- ATGCCCAGATTTTATAAACGGCTTCCCGGAACAAAACCAAGAAAACTTATTAATAATGATGACTTGCAAAAAGCTGTTGATGAAGTTCAATCAGGAAAGCTAAATTACAGAAAAGCAGCAGAAAAGTATGGAATAGACAAAATGAAAATATTCCGAAAATGCAAGCAAATTCACCAGAATAAATGTGGTGGGCAAACTACTCTAACTGATAATGAGGAGGCAGTTCTAGCAGATAAGATCGTTTTGCTTGCTGAGTGGGGATTCCCATTAACTGCAATGGATGTTCGACTGCTAGTAAAAGGCTATCTCAATAAATCAGGAAGAAATATTGCAAAATTCAATAATAATTTACCAGGGGAGGATTGGGTGGCGTCATTTTTAAAAAGATACAAATCTCTTCTCAGTACACGGATGTCCCAATCAATCAAAAGAGCTCGTGCAGCAGTATCTGCAGATACTATTAATAGCTATTTTGACAATTTGGAGTGCACTCTTGAAAGAGTGCACCCATGCAGTATCATCAATTATGATGAGACGAATCTCACGGATGACCCCGGAAATAAAAAAATTATTTGTCGAAGGGGGCAAAAACACCCAGAGAAAATTAATGACTTCACCAAATCGGCAACTTCACTAATGTTTTCTTGCAGTGGAGATGGGAAATTATTGCCCATATATGTCATATATAAGGCCGAAAATTTGTATGACTCCTGGCGCATAGGAGGCCCAAAGGGGGCGCGCTATGGTTGCTCCAAATCTGGTTGGTTTGACCAGCAACATTTCGAAGACTGGTTTTTTACCATTGCTCTTCCCTACCTTATGAAGCAACCTGAACCACGAGTTTTAATAGGTGATAACTTGTCAAGCCACTTTTCAGAAGCTGTTTTAACTGCTTGCTCAGAAAACAGTATTTCTTTTACAATGTTGCCCAAGCATTCTACTCATCTAGCTCAGCCCTTAGATGTGGCTTTTTTCCGGCCACTCAAATGTAAATGGCGATCTCTGCTGCAAGAATGGAGGAATCAGGGTAACAAAGGTACATTAAGTAAAATCAACTTTCCTCCCATGGTAAAGAAACTTCTTGAGGGTATTGAAAATGTTGAATCTAATATTAAAAGTGGGTTCAAGAAAACTGGAATTATTCCAATTGATCGCCAGCAAATTCTGAATCAGCTTCCCAACAAAGGAGTGGATGCCAACCCAGTCGAAGTTGAAGAAAACATGGACGGTAGTGTAGTGGATTTACTTCGTGAGATGAGATATGGGAAGGAGAAACCAAGGCAAAGAACAGCTAGAAAAGACAAACTACAAGTTGAGCCAGGGAAAAGTGTAAAAAATGTGTGTCAGAGTGAGTCAGAATCAGAGATTCTAGACGATGACAGTGAGGAAACCTCTGATGAAGAACCAGGTACAAATTCAGACTCTGAGGAAGATGAAGAACCTGCACCGGTACCGGTAGTAAATTTGAGAGAGGAACAAGAACCTCAAGTTGACTACATGTCTATAATGGAAGAAGAATTTTTAGTTATTAAGTTGAAGGACTCAATCACAAAGAGTGACAAATTATATGTGTCAAAGGTCTCATCCATAAATGAGAATTCTGCACGAACTACCAGAGTTGTAGAAGTGAAGTTTTTAAAGCCCTACAGAAACCATAGGGATATCTTTGTGTGGCCGGACATTGAGGAGTCAAGTGTAGTGTATCCTCATGAAATCTCACGGCGCCTGCCTCCTCCAGAAAATATTCTCCCCTTATCCAGAAATAAAAGTCGCTTGAAGAAATTTAGCTGGACTTTCTCTATTTGTTCAATACAACTCAAACCCCAAACTTCTGCCCCATATACTGCCGTTGGCAGAACAACAGATTCAAACAACTTGATCTTGCTCTCCCATGTGTCAGATCGAGCCTTTCTCAATACTTGTAAAACTACCTCACTGATTCCCTTAGCTTTAGCTACTACTATTGAGCAGAATACATTAAACCGGCCAGAGGAGCTAAATTCcacgcccaaTGTCGGGTGGGTTGCATCTACAAAGATTGGCGGCGAAACAAAATCAGCGGCATATTTATTAAGTAAGAAGTTAACCCATACTTCAGAGCTGATACAGTTGGTGTTTAATGATTTGTTTTTGTAA
- Protein Sequence
- MPRFYKRLPGTKPRKLINNDDLQKAVDEVQSGKLNYRKAAEKYGIDKMKIFRKCKQIHQNKCGGQTTLTDNEEAVLADKIVLLAEWGFPLTAMDVRLLVKGYLNKSGRNIAKFNNNLPGEDWVASFLKRYKSLLSTRMSQSIKRARAAVSADTINSYFDNLECTLERVHPCSIINYDETNLTDDPGNKKIICRRGQKHPEKINDFTKSATSLMFSCSGDGKLLPIYVIYKAENLYDSWRIGGPKGARYGCSKSGWFDQQHFEDWFFTIALPYLMKQPEPRVLIGDNLSSHFSEAVLTACSENSISFTMLPKHSTHLAQPLDVAFFRPLKCKWRSLLQEWRNQGNKGTLSKINFPPMVKKLLEGIENVESNIKSGFKKTGIIPIDRQQILNQLPNKGVDANPVEVEENMDGSVVDLLREMRYGKEKPRQRTARKDKLQVEPGKSVKNVCQSESESEILDDDSEETSDEEPGTNSDSEEDEEPAPVPVVNLREEQEPQVDYMSIMEEEFLVIKLKDSITKSDKLYVSKVSSINENSARTTRVVEVKFLKPYRNHRDIFVWPDIEESSVVYPHEISRRLPPPENILPLSRNKSRLKKFSWTFSICSIQLKPQTSAPYTAVGRTTDSNNLILLSHVSDRAFLNTCKTTSLIPLALATTIEQNTLNRPEELNSTPNVGWVASTKIGGETKSAAYLLSKKLTHTSELIQLVFNDLFL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365704; iTF_00365705; iTF_00365706; iTF_00365707; iTF_00365708;
- 90% Identity
- iTF_00365704; iTF_00365705; iTF_00365706; iTF_00365707; iTF_00365708;
- 80% Identity
- -