Basic Information

Transcription Factor Domain

TF Family: HTH
Domain: HTH_psq domain
PFAM: PF05225
TF Group: Helix-turn-helix
Description: This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 4 6.3e-12 3.5e-09 38.6 0.0 2 38 52 89 51 94 0.90

2 4 1.8e-12 9.7e-10 40.4 0.1 1 39 105 143 105 146 0.94

3 4 1.7e-17 9.4e-15 56.4 0.0 2 45 161 205 160 205 0.97

4 4 0.054 30 6.8 0.1 1 13 212 224 212 224 0.92

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	4	6.3e-12	3.5e-09	38.6	0.0	2	38	52	89	51	94	0.90
2	4	1.8e-12	9.7e-10	40.4	0.1	1	39	105	143	105	146	0.94
3	4	1.7e-17	9.4e-15	56.4	0.0	2	45	161	205	160	205	0.97
4	4	0.054	30	6.8	0.1	1	13	212	224	212	224	0.92

Coding Sequence: ATGTTGTTTGGGCACGGCCCAAAGATGCAGCTTAACGCCATGAATTTTAATAATACAGTAATTAGATTTAATGTGTATTTGATTGCAGTAGATATGAATGGGAGCGGATCGGATGGAAGTGGAAAGGGTCCGGGCATGAACAAGAGCTGGTCGCAGGAAGACATGGAGCTGGCGCTGGATGCACTGCGCAACCACAACATGAGTCTGACCAAGGCCTCCACCACCTACGGCATTCCGTCGACCACACTGTGGCAGCGCGCGCATCGCATGGGCATCGACACGCCCAAAAAGGATGGACCGGCCAAGTCATGGACCGAGGACGTACTCAACGTGGCACTGGAGGCGTTGCGCAATGGCAGCATATCGGCCAACAAGGCCAGCAAGGCTTACGgcattccgagtagtacattgtacaagatagcaagacgcgagggaatcaggctagcagcGCCGTTCAACGCGGCGCCGACCACGTGGAACCCAGAGGATCTGGACCGCGCACTGGAGGCGATACGCAGTGGCACGACGACTGTGCAGAAGGCGGCCACCGAGTTTGGTATTCCGTCGGGCACACTGTATGGCCGCTGCAAGCGCGAAGGCATCGAGTTGTCAAGGAGCAATCCGACGCCCTGGTCCGAGGATGCCATGAATGAGGCGCTCGAGTCTGTCAGGTAG
Protein Sequence: MLFGHGPKMQLNAMNFNNTVIRFNVYLIAVDMNGSGSDGSGKGPGMNKSWSQEDMELALDALRNHNMSLTKASTTYGIPSTTLWQRAHRMGIDTPKKDGPAKSWTEDVLNVALEALRNGSISANKASKAYGIPSSTLYKIARREGIRLAAPFNAAPTTWNPEDLDRALEAIRSGTTTVQKAATEFGIPSGTLYGRCKREGIELSRSNPTPWSEDAMNEALESVR

Sequence clustering based on sequence similarity using MMseqs2