Cpun024528.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:2812694-2826834[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00047 0.036 15.1 1.0 2 23 138 160 137 160 0.94 2 10 0.00062 0.048 14.8 4.3 1 23 189 212 189 212 0.96 3 10 7.6e-05 0.0059 17.6 1.5 1 23 218 240 218 240 0.98 4 10 0.63 49 5.3 0.1 2 21 240 259 239 260 0.93 5 10 0.24 19 6.6 4.4 1 23 268 290 268 290 0.91 6 10 0.69 54 5.2 2.3 1 23 295 318 295 318 0.91 7 10 8.8 6.9e+02 1.7 0.0 1 14 338 351 338 359 0.77 8 10 0.62 49 5.3 1.1 1 20 375 394 375 397 0.90 9 10 0.00012 0.0096 17.0 5.8 1 23 474 497 474 497 0.97 10 10 0.03 2.3 9.5 0.3 2 21 504 523 503 524 0.93
Sequence Information
- Coding Sequence
- ATGTCCTCTCATTACAATGGAGCGAATCAAGTGGCGAATAGTGACGCAGCAGCCGACCGAAGACGGTGCAGCTCCCTCTCAAAGTTTGAAGAGGAAATCGGCCAGATTGAAGGGTTTAAAGGCTTCGATAAGGTCCCAAAGGTGTTGTTGCCGCGTTACGACATAACGCCTTATCTCGGTAAGCGTAAACGGCAGCTAGGTGCGCCGGTAAACAAACCCGAAAGGGGGACTTTCGAGGAAGTCTCTCAAGGCGGTTTCCATTCCGTTTACATAGCTGATCCTCTGGGGCTGAAGCCACTGAACTCGTGCAAAGTCCAAGTCTTCAGAGAAAACTTGGAAAAGCTCAAAGAGAACCTCATAAGCTCACCTAGATCAGACATATCCATCTCCGATGAAACAATGGCTAGCATCAAATGCAAGATATGTAAGAAGGTGTACGCTAGCGAGAAGAAACTGTTGAACCATCAAGAGAATAAGCACATGATAGTTTATAAGCCAGAGCCCAAGCCGCAGAAGAGAGTATCGTTCTCCGATCATATCATAGTGCACGAAGTAAAGGAGTATCACAAGTGTAGGAAATGTACGAGAATATTTGAAGACTATAAGTCTCTGAAAGCTCATATGAAGCTGAAACATAAAAAACGTAAGTGCTACATTTGCAATTACTGCAATAAGAACTTCGTAGACAGAATGTTTTTCAAAGtacatataaaattacattGTGACGTCTGCGGATTGTTATTGCCTAATAAGTCATCGTATTTGGAGCATAAGCGTAATGTTTGTAGAACGGTGAGGTTGCATAAATGCAAAACTTGTGATTCATCATTCTTTAGATTCATGGACTTGAAAGACCATAGCTACGAACATTTGAGTATATTGTACATTTGTGATATATGCAAAGATCAGTTCTCAACTAAATGTGCCATCTCCCATCACATTGCCTTCCTACACTGCAAGAAGAGGCCGACATCGTTATACGCGATGCGTAATTTAGGCAGCGAAAGACTATATCTATGTAACTTCTGCGATGAGAGTTCAGTAGACCGAGACATTATAGAGAATCATGTGCAAATCTTACCGGACTTGACGAATCGTGCCATGACTGGCTACAAAGACTTCTATTTCTGCGATCAGTGCTTGAAGAAGTTTGGTACGGAACAAGATATGTTGCAGCACAAATGGACGCACTTTTTAAAGACCAGTGACAATTCTCAAGTTCGGCCGAAGGGTATACTTACAAAGAAGGAGTCTAATATTATGAGaactaaatacaatataaatgaAAAGATACCGGATCATTTCAAACCGTCTGTGCTTCTGTCCAGAATAGATCCAGACATGGGACTGCAGGTGAACGGCAGTGCAGCAGATCATTTTGACGGAGTCAAAAGGCCTAGGAAGACGTTGATATCTAAACATCAGTGTCAAACTTGCGGCAAATACTACTCGTCTAACTACTGCCTGACCCGCCACATCGAGACGCAGCATCGCGACTTCGAGAACCTCCGCTGTAAAGTGTGTGAAGAGACCTTCGTCTGGCCCTCACTCCTGCAATCGCACAGGTGTATACGCCTCAAACTTCCAGAAATGCCGTTCGACGATGCCAGACCCGAAATACATTTCGACAACCTTCACGAGATCACGCAGAACGGTTTTGATGACTTCAACATAGATGATAACGATGACTTTATGAGTACTGTGGACTTCGAAATACCGGCACCTGTGGTGGAACTTACTGAGGGTACGAACGGTTTTAGTGGTGATGTGAACTGTATGTCCCCGTTGCAGAGTTTAGGGTATAAAGTGGTGATGCAGGAGGTCCCTATAGAGTTTTAG
- Protein Sequence
- MSSHYNGANQVANSDAAADRRRCSSLSKFEEEIGQIEGFKGFDKVPKVLLPRYDITPYLGKRKRQLGAPVNKPERGTFEEVSQGGFHSVYIADPLGLKPLNSCKVQVFRENLEKLKENLISSPRSDISISDETMASIKCKICKKVYASEKKLLNHQENKHMIVYKPEPKPQKRVSFSDHIIVHEVKEYHKCRKCTRIFEDYKSLKAHMKLKHKKRKCYICNYCNKNFVDRMFFKVHIKLHCDVCGLLLPNKSSYLEHKRNVCRTVRLHKCKTCDSSFFRFMDLKDHSYEHLSILYICDICKDQFSTKCAISHHIAFLHCKKRPTSLYAMRNLGSERLYLCNFCDESSVDRDIIENHVQILPDLTNRAMTGYKDFYFCDQCLKKFGTEQDMLQHKWTHFLKTSDNSQVRPKGILTKKESNIMRTKYNINEKIPDHFKPSVLLSRIDPDMGLQVNGSAADHFDGVKRPRKTLISKHQCQTCGKYYSSNYCLTRHIETQHRDFENLRCKVCEETFVWPSLLQSHRCIRLKLPEMPFDDARPEIHFDNLHEITQNGFDDFNIDDNDDFMSTVDFEIPAPVVELTEGTNGFSGDVNCMSPLQSLGYKVVMQEVPIEF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -