Cpun024556.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- ZEB2
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:3136256-3143313[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 6.1 4.7e+02 2.2 0.3 1 20 213 232 213 236 0.81 2 11 0.042 3.3 9.0 6.1 1 23 243 265 243 265 0.98 3 11 5.5 4.3e+02 2.3 2.3 2 23 270 291 269 291 0.93 4 11 1.9 1.5e+02 3.8 0.3 2 23 296 317 295 317 0.91 5 11 0.00062 0.048 14.8 8.6 1 23 320 342 320 342 0.98 6 11 0.00033 0.026 15.6 4.0 1 20 346 365 346 369 0.89 7 11 1.3 1e+02 4.3 0.0 5 20 381 396 378 398 0.87 8 11 0.00015 0.012 16.7 0.9 2 23 416 438 415 438 0.95 9 11 1.5 1.2e+02 4.1 4.0 1 23 444 467 444 467 0.93 10 11 1.6e-05 0.0013 19.7 0.2 2 23 477 498 476 498 0.97 11 11 0.0023 0.18 13.0 3.0 1 23 504 527 504 527 0.96
Sequence Information
- Coding Sequence
- ATGGAGAAGAAGCAATCTGAACCATTTTGTCATGCTTGTCTTAGCGTTGGCCGAACACTGTATCCTTTGGAAAAATATTCTGATATTTACAGTAGAATTTGcagtaatttttataagCAAAAGAAGACTAATCTTTCAATTAAAATATGCTGGGAATGTGTAGCAATTTTGAGAAAAGCGAAAATATTTGAAGAGAATGTAATAAAATCGCAAAATATCCTAGCTTTACAAGGCCATAagcagAGTAATATAAAGAAGAGTTTATCACATTTACAAGTCATTCATTTAGATCCAGATGACACCATTAATATAAAACATGAAGAGGATAATAAATGtctaatacaaaatataaaagaagAATTAGATCCTGTAATGGAATGTGATTACAATGAATGCACCGATAATTATGACAATTATTCTCTATTAGAAGAATTGAAGACAGAATTTAAAAGAGAGAATTGTGATATTACTATTaagagaaaaagaaataaaaaacccaaACAATATAAGTATGTTTTTGATAAAATAAGCAGAAATGATGTTGAAAAGTTGAGTAAAAAGATACCAATCGAAATGAAAGAAATTAAGTATTGGATGGGTAAGGAGAGAGATAGTGTAGTGTATAAGAATGCTACGTATAAATGTGAGATGTGTGTACAGTTTTGGAAGACGGAGAAGGGTCTAGCAGTACATAGTGGGAAATATCATGGATCGTCTTCAGGTCCCTACATCTGTGACATATGCCGCTGCCGTTTCCATAACAAGAAGCGACTAACCGTTCACCTGTCGCGGCACATGTGCGTACTAGAGTGTGCCACGTGCCGGCACAGGTGTTATGTGCCGCGGCACATGGCAGCACATTTGGCTGAGCACACGAGGCGTGTGCAGTGCACAGCTTGTGGTATTACGGGCAACATGAGACAGCTGTATAGACACTACAGGGAGCTGCACGAGTCGTTCGTGTGCGACCTGTGCAGCAAGAGATGCAGGTCGAAGCACATGCTGGAGAAGCATATGAGacaCCACTTCGAAAGCTACGAGTGCAAGATCTGCGACCGGCGGTACAAGACGCGCGCGACGCTCCGTAAACATTGCGACACGCGACACTGCGCTGCGACGCGCGAGCACGCGTACTGCGCGCCGTGCGACAAACAGTTCGGCAGCGCGCCGCTGTACCGGCGGCACGTCGCCGGCAGCCGCGCGCACGCCGCCGAGCGCACGCAACACAGGACCGCCACCAAAGTGCCGTGCCCGTCCTGCGGTCGCGTGTACTCGCGCAAGACGTACATGATGAACCATTACCGGCACGTGCATATGAACCAGTCCAACTACTACTGCCAGCTGTGCGACAGGCACTTCTTGAACCGTACGCGGTACGTCGACCACGTGAGGTACAAGCATGAAGGCGTCCAAAAGGAAAAGAATAAGATGTGCAATATTTGCGGGCGGGGATTCGCGGCCAACAGAACCCTAATTAACCACATAAGGACGCACTCGGGGGAGCGTCCATTCGAATGCACGCAATGCGGCGGCAAGTTCACTCAGAAGCACGCTATGCTCTCCCACGTGAGGCATGTGCATCTGAATGGTAAGCGGCGAGCGTGCTGGCCGCAGGACTAG
- Protein Sequence
- MEKKQSEPFCHACLSVGRTLYPLEKYSDIYSRICSNFYKQKKTNLSIKICWECVAILRKAKIFEENVIKSQNILALQGHKQSNIKKSLSHLQVIHLDPDDTINIKHEEDNKCLIQNIKEELDPVMECDYNECTDNYDNYSLLEELKTEFKRENCDITIKRKRNKKPKQYKYVFDKISRNDVEKLSKKIPIEMKEIKYWMGKERDSVVYKNATYKCEMCVQFWKTEKGLAVHSGKYHGSSSGPYICDICRCRFHNKKRLTVHLSRHMCVLECATCRHRCYVPRHMAAHLAEHTRRVQCTACGITGNMRQLYRHYRELHESFVCDLCSKRCRSKHMLEKHMRHHFESYECKICDRRYKTRATLRKHCDTRHCAATREHAYCAPCDKQFGSAPLYRRHVAGSRAHAAERTQHRTATKVPCPSCGRVYSRKTYMMNHYRHVHMNQSNYYCQLCDRHFLNRTRYVDHVRYKHEGVQKEKNKMCNICGRGFAANRTLINHIRTHSGERPFECTQCGGKFTQKHAMLSHVRHVHLNGKRRACWPQD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -