Basic Information

Insect: Conogethes punctiferalis
Gene Symbol: RREB1
Assembly: GCA_031163375.1
Location: CM062099.1:5909581-5915326[+]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 12 0.028 2.2 9.5 0.4 1 23 96 119 96 119 0.96

2 12 6.3 4.9e+02 2.1 0.5 1 11 161 171 161 182 0.78

3 12 0.023 1.8 9.8 0.1 1 23 309 331 309 331 0.97

4 12 0.0012 0.095 13.8 0.4 1 23 340 362 340 362 0.99

5 12 0.00075 0.059 14.5 2.0 1 23 368 391 368 391 0.97

6 12 0.003 0.24 12.6 1.6 1 23 747 770 747 770 0.96

7 12 0.00025 0.02 16.0 1.3 2 23 963 984 962 984 0.97

8 12 0.026 2 9.7 5.3 1 23 990 1013 990 1013 0.97

9 12 0.26 20 6.5 1.3 1 23 1045 1069 1045 1069 0.91

10 12 0.42 33 5.8 0.1 1 23 1094 1117 1094 1117 0.91

11 12 0.0019 0.15 13.2 0.2 2 23 1157 1178 1156 1178 0.96

12 12 0.029 2.3 9.5 5.3 1 23 1184 1206 1184 1206 0.97

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	12	0.028	2.2	9.5	0.4	1	23	96	119	96	119	0.96
2	12	6.3	4.9e+02	2.1	0.5	1	11	161	171	161	182	0.78
3	12	0.023	1.8	9.8	0.1	1	23	309	331	309	331	0.97
4	12	0.0012	0.095	13.8	0.4	1	23	340	362	340	362	0.99
5	12	0.00075	0.059	14.5	2.0	1	23	368	391	368	391	0.97
6	12	0.003	0.24	12.6	1.6	1	23	747	770	747	770	0.96
7	12	0.00025	0.02	16.0	1.3	2	23	963	984	962	984	0.97
8	12	0.026	2	9.7	5.3	1	23	990	1013	990	1013	0.97
9	12	0.26	20	6.5	1.3	1	23	1045	1069	1045	1069	0.91
10	12	0.42	33	5.8	0.1	1	23	1094	1117	1094	1117	0.91
11	12	0.0019	0.15	13.2	0.2	2	23	1157	1178	1156	1178	0.96
12	12	0.029	2.3	9.5	5.3	1	23	1184	1206	1184	1206	0.97

Sequence Information

Coding Sequence: ATGGAAAGCGCCCTACGTTATTCAAACAAAGCGAGAATCGATTGTAACAAATATCCTTTTGTTGTTGCAGATATCAAAACAGAGGAGGTCATTACAGAAGCCAAAGTAGAAGCTGACGAAGAAATGGAATTGATAGAGAAACAGGAGCTGAGAGCGACTAGGACGACGAGTATTGACAGCGACAACCGGTCGGACAGAAGTGAGGAGGAAGATTCTAGAAGGTCCCGCAAGAGGGCAGCCTCCACGTCGCCCTCCCCCATACCAGTGGACAAGAGGATCACCAGATTCGAATGCCCCAAATGTCGTCTCCGTTTTGACTCGGCAAATGCTTTCGACATCCACCGTTTCACTGCGCACGGCGATGACTCCAGAACAGGCTACGACAACCTCGCCTACGTAGACTTCTCTAGCAAAAAGTTCCCTGATATAACGAGAGGTATTTGCGAACGCAATCCGCATATTTCTATCACTGAACAACGGTACAGATGTGATATGTGCTCTCGTGACTTTCCCTGCGCACAAGCTATGGACATCCATCGCAAAACGTGCACCAATACGAGGATTCCAACACCTGAGCGAGACAGAAGAGAAGACTTTTTCGCTAAGCTTGACCTTAGAAACAGATCCTTCGGCATCCCTGGCACATTAACACCGCCAATGGAGAGATTTACGCCAAAATTCGAAGACGGACACGTCACTACGAACGGTATCAGACACATCGACGCCGCACGAGATCTCGCTGATATCCAATCTATTCTCAACGTGACATCTGCTGGAAGTCTTTTGGAGAGATTAACTGGGACACGAGTGGCACTCGAGAACACAGTACTCACACCGCCGGACACCGGTAGTAAAGATAGGGAACATGAAGAGACACAAGATAACTTTGCAGCTGAATTCCGACGCATGAAGCTGCGAGGTGAATTCCCTTGCCGTCTATGTCCCGCTAAATTCCCAAATCTTCGCGCCTTAAAGGGACACAACAGAGTTCATCTCAGCGGTACAGGGCCTGGACCGTATCAGTGTAACATGTGTCCCCATGCTTCTCTCGATAAGGCAGCGTTAGTGCGACACATGCGTACTCACAATGGAGACCGACCCTATGAATGCGCAGTCTGCAACTACGCATTTACTACAAAGGCTAACTGTGAACGACACTTGAGAAACAGACATGCCAAAGTCACCAGGGAGGACGTTAAACGCTCAATCATCTACCACCCATCAGAAGACCCTAACAATGATGAAGTCAACTCTAAACTAGCCAGAGATGATGTGAAAAGGTCTCTCGCTTTCCATACTCCAGAAATAGAAAGACGCAGTGAAAGTACCGGTCGGGATACTCCACTGACTCACTTCACTCCTAGCTTCATAACTGAAAGGCATCCCGTTGCTTCACTTACAACCAAACCTATACCACCCATACCAACTTTACCAGACACTCCAACATTGACCCCAAGAGAGACTGAACCACAAATGCCTAGAATCAAAGTCAAAGGTATAGGTCAACTGACTCAAATACCTGAATATAGACCACCAGATCTGTCATACAAAACAAACGATGTCCAATCTGATACTTATGATGAAGAAGCTCCAGTTGACCTGAGCACAAGTGACAACAACAGCTGTGATGTTCTAGATCTCAGTAATAAGAAGAAGCGCGATGTTGATAACGATGAACCTAAAGCCCCACCGAGACCTTCATTCGAGCCTGACCCTGCAGCGGTCACTGCGGCGACcattcaaaaagcgagcctattaCTAGCTCAACAGAGCCTTTTCGAAAATACTCTTCCCAAAATCGATCCGGCAAATTATTACGCAACTCAGCTATCCCAACTTTATGCCGGCACAGTACCAGGAATCCCTGGACTGCCTCTGCCGCCTTCCTTTCCTATCAGCCCTTATTTTCTCCAACCCTCATTTTTTCCTCACCCAACCGACTCCCAGGAACTGGCCGAAATAAAGCAGCGTATCCAAAAAGAGATCATTCGCAACCTTAGCATGTCTGGGGGAAGGCTTGTACCTAACGACCAGGAACCTCCCACAAAACAGGAACCGGAGGAAGAGGATCAAAAGCCTCTACCGCAAACAGTTTCTCCTTCCCCACCCCCTCAAGCAGAATCTCCAAGGCCCATTAATAACAGCCTCGTCCCACAAAACGACTCCGTGAAGATGGTCATCAAAAATGGTGTTCTAATGCCAAAGCAGAAGCAAAGACGCTACAGAACAGAGAGGCCATTCTCCTGTTCTCAATGTTCCGCTCGCTTCACCCTTCGCTCGAACATGGAAAGACATGTCAAGCAACAACACCCTCAGCACTGGAGCGTCAGAAGACCAGCGCCAAGAGCTCCCCCGCCATACCCAACTCCTGACGCGTTGGCAGACAGAGTCAAGTACGCTCTTTTAGCCAGACACCTAGAAAGACCGTTGCAACAACCAGAAAGATCACCGATACGCAGAGACTCAGACGAGGTCGCTGATAATGAGGAGGATGAAGACGATACTTTAGTCATAGACGAGGAACCTGAAGATCTTAAATCAGATGAGCACACAGCTGCGCATAGAGCTGCAGCCGAAATCCTTATGGCGACTCGCCAGCAAGAACTCAACAAAGACTTCGACCTGAAGATAGCTGGTAACCTGATTAATAAGCCCATTTTGATAACTCCTGAGAAGACTGAAACGGGAACAGATCCTATACCACTGAACCATGATGCTGTGCCCGTAGTGCCGACGCGAAGCGATGAGGAAGAAGATGAGGAGGGTCTCGTCGCCTCGACTAGTGAAGGCAACAACTCAGGAAGCGACGAAAACAAATCTGAATCTGACACAGGAACCCAACCACCGAAGAAGAAGTCCGCCTATAGCCTAGCCCCGAACCGAGTGTCCTGTCCATATTGCCATAGAAAATTCCCATGGTCTTCATCGCTCCGCCGCCACGTCCTCACCCACACAGGCCAGAAACCCTTCAAGTGCCCCCACTGTCCACTTCTCTTCACCACCAAGTCAAACTGCGACCGTCATCTGCTCAGAAAGCATGGTGGCTCAGCCAGGGCCATACTAGCCGAGCCGATCCAGGACTCAGTGCCCGCCCCTCAACCAAACGACTCCAGAACAGTGCCAGAAAGGCCTTTCAAATGCGCATCCTGCCCAAGCAGTACATTCTCTTCTATGGAAACCTTGAAGAAGCATATGTCTTCGCGGCACGGAACTGGCGACTCTTTACCTGGTTCTCCCAACCCTGAGATGAGTGATGACGCACCGGATGGTGGACTGGTGTTCAAGTGCCATCTTTGTGAAGCCTCGTTCGGAGAAAGGGGGGGTGCATTGGCCCATTTGGCTTCTACGCACGCGGCGGAGTATGAACAGCTGGTCAGCAAGGGGGCTTTGGACGCTGCTAGCGACAGGAGTGAaagcgctgatgatgatgagagggGGAAGTTCCCTGATCACGCTAATAGAAAGGTCGTCTGCGCTTTCTGCGTCCGTCGCTTCTGGTCCGCCGAGGACCTGCGCAGGCACATGCGCACACACTCCGGCGAGAGGCCGTTCGCGTGTGACCTCTGCCGGAGGCGGTTTACTCTCAAACACAGCATGCTGCGACACCGCAAGAAGCATCGGGAGGAGGTCACGGATGACGAAGAGGTGTCTCCTCCCCACACGCCCGTGGAAGCCGATAACCAAGCTAATGGATATCGCTACCAAGACGACGACGGCTCCGGAAACGAGATCCCCAGCAATGTAAACAACAACAACTCCCCCCCAGCCGCCCCCTACGAGAAGAAACTCAAACTCGACATGACATCCCGCAAGTACTCGTCCGAAGTGGAAAACGACACGGAAAACGGCGGTGATCTCATCGGGAAACTTCTTGGCATTCCGGACAAGACAATCATTAACAAACTTCTGTCGTCCGCGGACGAAGCAGCGAAGTTCTTAGGGGTAAACAAATGA
Protein Sequence: MESALRYSNKARIDCNKYPFVVADIKTEEVITEAKVEADEEMELIEKQELRATRTTSIDSDNRSDRSEEEDSRRSRKRAASTSPSPIPVDKRITRFECPKCRLRFDSANAFDIHRFTAHGDDSRTGYDNLAYVDFSSKKFPDITRGICERNPHISITEQRYRCDMCSRDFPCAQAMDIHRKTCTNTRIPTPERDRREDFFAKLDLRNRSFGIPGTLTPPMERFTPKFEDGHVTTNGIRHIDAARDLADIQSILNVTSAGSLLERLTGTRVALENTVLTPPDTGSKDREHEETQDNFAAEFRRMKLRGEFPCRLCPAKFPNLRALKGHNRVHLSGTGPGPYQCNMCPHASLDKAALVRHMRTHNGDRPYECAVCNYAFTTKANCERHLRNRHAKVTREDVKRSIIYHPSEDPNNDEVNSKLARDDVKRSLAFHTPEIERRSESTGRDTPLTHFTPSFITERHPVASLTTKPIPPIPTLPDTPTLTPRETEPQMPRIKVKGIGQLTQIPEYRPPDLSYKTNDVQSDTYDEEAPVDLSTSDNNSCDVLDLSNKKKRDVDNDEPKAPPRPSFEPDPAAVTAATIQKASLLLAQQSLFENTLPKIDPANYYATQLSQLYAGTVPGIPGLPLPPSFPISPYFLQPSFFPHPTDSQELAEIKQRIQKEIIRNLSMSGGRLVPNDQEPPTKQEPEEEDQKPLPQTVSPSPPPQAESPRPINNSLVPQNDSVKMVIKNGVLMPKQKQRRYRTERPFSCSQCSARFTLRSNMERHVKQQHPQHWSVRRPAPRAPPPYPTPDALADRVKYALLARHLERPLQQPERSPIRRDSDEVADNEEDEDDTLVIDEEPEDLKSDEHTAAHRAAAEILMATRQQELNKDFDLKIAGNLINKPILITPEKTETGTDPIPLNHDAVPVVPTRSDEEEDEEGLVASTSEGNNSGSDENKSESDTGTQPPKKKSAYSLAPNRVSCPYCHRKFPWSSSLRRHVLTHTGQKPFKCPHCPLLFTTKSNCDRHLLRKHGGSARAILAEPIQDSVPAPQPNDSRTVPERPFKCASCPSSTFSSMETLKKHMSSRHGTGDSLPGSPNPEMSDDAPDGGLVFKCHLCEASFGERGGALAHLASTHAAEYEQLVSKGALDAASDRSESADDDERGKFPDHANRKVVCAFCVRRFWSAEDLRRHMRTHSGERPFACDLCRRRFTLKHSMLRHRKKHREEVTDDEEVSPPHTPVEADNQANGYRYQDDDGSGNEIPSNVNNNNSPPAAPYEKKLKLDMTSRKYSSEVENDTENGGDLIGKLLGIPDKTIINKLLSSADEAAKFLGVNK*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00961349;
90% Identity: iTF_01071959;
80% Identity: -