Cpun020900.3
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062099.1:9883026-9895183[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 13 0.15 12 7.2 1.9 1 23 209 232 209 232 0.93 2 13 0.00056 0.043 14.9 3.1 2 23 239 260 238 260 0.96 3 13 8.9 7e+02 1.7 0.6 1 19 264 282 264 286 0.79 4 13 0.00052 0.04 15.0 6.5 2 23 292 313 292 313 0.98 5 13 0.0038 0.3 12.3 1.1 1 23 317 340 317 340 0.97 6 13 0.0038 0.3 12.3 1.1 1 23 396 419 396 419 0.97 7 13 0.0038 0.3 12.3 1.1 1 23 475 498 475 498 0.97 8 13 0.0038 0.3 12.3 1.1 1 23 554 577 554 577 0.97 9 13 0.0038 0.3 12.3 1.1 1 23 633 656 633 656 0.97 10 13 0.025 2 9.7 0.2 2 20 675 693 674 695 0.93 11 13 0.021 1.6 10.0 2.0 5 23 722 741 721 741 0.93 12 13 1.9e-06 0.00015 22.6 0.8 1 23 780 802 780 802 0.97 13 13 7.8e-06 0.00061 20.7 1.0 1 23 808 831 808 831 0.98
Sequence Information
- Coding Sequence
- ATGACGGATTTAAAAGTGTGTAGAATTTGTCTCGGAACCAAAGTAAAGATGTACAAATTCGATCAATTCCAGCTGACGTATTAttacgaagaaataatggatgCAGAGTTCAACAAAAGAGATGGTCTTCCGCATTACTGCTGTTACGAGTGTGCAACAATGCTCCATAAGTTCTACAAATTCAAAAAGAAATGTACTCAAGCACATAAGATTTTCAAAGAGCTTTTGCGGAAAGGTCCGAACAAAATATCCCACCTGTCGACATCGCTAGACATTCTTAGAGTGACGAGGAGAGTCAAAACAATCACCATCCGCTGTCATCGTGAACGTGAAACTATCGAATCAGATTTCGATGAAGAAGACAATGAAGACttgaagaaaataaaagaaaaagaagagaaaTTACAGAAGGAAGCCAAACTAGACACTGTCGAGACATTCATAAAGGTTGATGAGCCAGAACTGCTAAGCCTAAAAAGGACTTATAAGTTCAATAAGCCCAGGAAGAAGCCGTCGGAGAGTTTCCTAGATCCTAATCATTGGAGGAAGTCTTTGTTGAACGAGGAAGAGGCGTTGAGGGAGTTCAAAGCGAGAGCTGATGATCCCAAGTATCCGTTGTGGGCGTACAAATGCAATGATTGTATGAAAGGCTTCCGGAAAGAGGATATTTATAAACGGCATAGGCTGTTGCGGCACAATGAGGCGTACACGATAGTGTGTCACTTCTGCAAGATGTCGTTCAAGCGCAACTTCCAGCTGGGCAAGCACGTCCGCCTGCACTACACCAAGTACGAGTGTCTCCGGTGCGACCTGGTCTGCTCCTCAGAGACTAGCGCAGACATGCATGAAGAGTTCCATAATGGAGTTATTAGAACCTGCCCGCATTGCAACAGACAGTTTAGACACTTGTCGACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTGTGAGCGAGCTGGGCCTGAGCAAGCACATGAAGACGAAGCATCTGAGCCACCTCAATAACCCGGTGAGTGTTCTGTTACTCCCAGACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTGTGAGCGAGCTGGGCCTGAGCAAGCACATGAAGACGAAGCATCTGAGCCACCTCAATAACCCGGTGAGTGTTCTGTTACTCCCAGACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTGTGAGCGAGCTGGGCCTGAGCAAGCACATGAAGACGAAGCATCTGAGCCACCTCAATAACCCGGTGAGTGTTCTGTTACTCCCAGACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTGTGAGCGAGCTGGGCCTGAGCAAGCACATGAAGACGAAGCATCTGAGCCACCTCAATAACCCGGTGAGTGTTCTGTTACTCCCAGACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTACACCTGTCCACATACTACACCCACCTGCGCACGCACAGAAGCCAGCACATGTGCTCGCTGTGCGGCGACTCGTTTGTGAGCGAGCTGGGCCTGAGCAAGCACATGAAGACGAAGCATCTGAGCCACCTCAATAACCCGGAGCTCGCAATGAAGAACAGTGACGACGTAGTGTACTGTGAAGTCTGCAAGATCAGTTTCCGGAGCAAGGAGGCCTATGACAACCACCTGGCTCACTCTGCTATGCACACTGACCAGAACCGAGCCTATCCCGTTTTGGAAGACATCGTAAGAGATGATAAACCTGATTTAGATGATTGCGGCGAACACTTCAAGACTCAACAGGCGTACACGAAACATCACAACGAGAAGCATCCCAGAACGTCGCTCTATTCGCCGGCCGAGCGCGTGGTCTGTGAAATTTGCGGCGCGAGAGTTGCGCCGGGCAGCGTGGCAGCTCACGTGAACCAACACACGCGCAGTAAAATGTACACTTGCGACACCTGCGGACGATCCTTCACTACCAACAACATGCTTAAAAACCATTTGGTGGTGCACACTGGGGAGAAGCCGTTTGAATGCAGCCTCTGCGAGAAGCGGTTCACCCAAAACGGCAGTCTTAGTCTCCATTACCGGACTATACATTTGAAGAAGCCTTATAAAAGGAACAGGAGAAAGAAAATCGACGACATCAGTTCCGATCACGGGCAGGAAGTATTTATGGCAGCACCTTTTATGTAG
- Protein Sequence
- MTDLKVCRICLGTKVKMYKFDQFQLTYYYEEIMDAEFNKRDGLPHYCCYECATMLHKFYKFKKKCTQAHKIFKELLRKGPNKISHLSTSLDILRVTRRVKTITIRCHRERETIESDFDEEDNEDLKKIKEKEEKLQKEAKLDTVETFIKVDEPELLSLKRTYKFNKPRKKPSESFLDPNHWRKSLLNEEEALREFKARADDPKYPLWAYKCNDCMKGFRKEDIYKRHRLLRHNEAYTIVCHFCKMSFKRNFQLGKHVRLHYTKYECLRCDLVCSSETSADMHEEFHNGVIRTCPHCNRQFRHLSTYYTHLRTHRSQHMCSLCGDSFVSELGLSKHMKTKHLSHLNNPVSVLLLPDTCPHTTPTCARTEASTCARCAATRLHLSTYYTHLRTHRSQHMCSLCGDSFVSELGLSKHMKTKHLSHLNNPVSVLLLPDTCPHTTPTCARTEASTCARCAATRLHLSTYYTHLRTHRSQHMCSLCGDSFVSELGLSKHMKTKHLSHLNNPVSVLLLPDTCPHTTPTCARTEASTCARCAATRLHLSTYYTHLRTHRSQHMCSLCGDSFVSELGLSKHMKTKHLSHLNNPVSVLLLPDTCPHTTPTCARTEASTCARCAATRLHLSTYYTHLRTHRSQHMCSLCGDSFVSELGLSKHMKTKHLSHLNNPELAMKNSDDVVYCEVCKISFRSKEAYDNHLAHSAMHTDQNRAYPVLEDIVRDDKPDLDDCGEHFKTQQAYTKHHNEKHPRTSLYSPAERVVCEICGARVAPGSVAAHVNQHTRSKMYTCDTCGRSFTTNNMLKNHLVVHTGEKPFECSLCEKRFTQNGSLSLHYRTIHLKKPYKRNRRKKIDDISSDHGQEVFMAAPFM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -