Cpun024478.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- THAP3
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:1959914-1972560[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 11 0.0045 0.35 12.0 0.4 1 23 391 413 391 413 0.98 2 11 0.0016 0.13 13.4 10.6 1 23 420 442 420 443 0.95 3 11 0.09 7 8.0 1.9 1 23 447 469 447 469 0.97 4 11 0.044 3.5 8.9 1.1 1 23 474 497 474 497 0.97 5 11 0.022 1.7 9.9 0.4 1 23 501 524 501 524 0.94 6 11 0.0045 0.35 12.1 0.1 3 21 537 555 536 560 0.92 7 11 0.79 62 5.0 0.4 2 23 611 633 610 633 0.95 8 11 0.0099 0.77 11.0 0.7 2 20 649 667 648 670 0.91 9 11 0.00011 0.0087 17.1 0.6 1 23 676 698 676 698 0.98 10 11 9.1e-05 0.0071 17.4 4.3 1 23 705 727 705 727 0.97 11 11 0.00012 0.009 17.1 1.3 1 23 733 756 733 756 0.93
Sequence Information
- Coding Sequence
- atgagGTGTTCCGTGACTGGGTGTAGAAATGATTCAAGATACAGTTCCAAATTGCAAGGAATTACTTTTCATTTGTTTCCTCTGGAGCCGTCGCTCCGGTCTGCGTGGCTCCAAGCCATAGGCAGGGAGGATTGGCAACCAAAGGAGGGAAGTACAGTTTGCTCCGAACACTTTCACTGCGATGACCTCTACGACACGAGGAAAGGTTTGAGGAGGAAGGTGCGGCCGGGAGCCGTGCCTGCTGTTTTTCAGGTGTGCAGGATATGTTTGGCAACTGGTTGCAAGCTGTTGTCCATGAAGAAGTACAAATTGGAACAGGCGTATTTGGATCTCACTGGAGTATTGCCATATATCGACGACCGGTTGCCCCAAAGCGTTTGCGTGGAGTGCGCCCAACGCCTCGCTAGTTGCCAACTCCTGCGCAAGCGCAGCCTGCGCGCCAACGCACTCCTCGCCGAGTTGCTGAGGGAACAGGATCAGGTAACAGTCAAGACCGTCAAAGTAATAAATCGCAAGGACAACCAGCTAGTGTCCCGTCTCGCCCCAAAAGTGTTTACACCAGACCATTACTACTTAACCCTCAATCACGACGACGTAGTCAACCAAAAATCTACAGAAGAATCCGTTACTAATGCAGAACCAGAAATCAAAGACGAAAATGATTGCAACGAGATATTTATAAGCGAATTCGATGATACAGAATGTAATGTAGCTGACAATGACATTGATGGAGCTTCTGATAAGGCttttgatgacgatgatgatgataatgaatttgAGGTtacgaatgatgatgatgataaatttgaGGTTACGAATGATGTTAATGATAAGGAATTAGAGATTAAGAATGAGGATGATGAATTTGACGAGCCGAAAGATGGTGATGACATGGTAGCGTCGGATTCGTCGACTGATGAGGATTTGCCAAGGGGTGTGCTTAGAAGCAGGTTGCAGAAAAGGAGGGGGAAAGAAGGAAAGGGACAGAAGAAAGGGAAGAAGTGTAAGGATAAGAAACCGGAACAACCTAAAGTGGATAGAAGGCGGAAACCTTTCTTTAACGATGAAGATTTGAGAGAGACACTGTTCACGATAACGGATTTGACTTATGATGAGCAAGTAGCCGAGATTGATAAGAGGAAAGAGAGTTCTAATTACAAAAATGGCGTTTATAAATGTCAAGAGTGCTATAAAGGGTTTTTGGATGAGGACGCTTATAATTCACATATGGCGAGGCATACAAATGAAAGCGGCGAATATCGCTGCCACATATGCAAGACTCACTTCAAGCACCCGCACGCGCTGCGCAAGCACATCACGGCGCACCACACGCAGCGGTTCAGCTGCAAGCAGTGCCCGTACGCGACCACGCACCGCCAGTCGGCGCGGCTGCACGAGCGCTGGCACAAGGGCACCAAGTACACCTGCCCGCACTGCCCCGACGAGTTCGTCAAGTTTACCACGTACATGGGCCACATCCGCATCAAACACCCGTCCGACTTCGTGTGTCAGCTGTGCGGTTTCTCCTTCGTCAGTGAGAAGGGCATCCTGCTGCACAAGAGATTGAAGCATCGGCAGGATGTCCAGATACCGGAAGACGGTCCCTTCTGCGAGCTGTGTAACCTCCGCTTCATCGACCCTGAGGCCCTCCGGCGCCACGTCAGCGTATCAGCGCGCCACAACACGCTGGACAAGAGCAAGAGGGCGCCCAACAAGCCGACCAAGGGCAGGCGCGGGCGGGACCAGAGGGGGAGGGAGCGGCGCGCGCGGGACGCGGGGGAGGAGGACGCCGAGTGCGCTGGGGCGGGGAGACGCGCGGAGGGACCTATACCGTGTGAGCAGTGTGGCATGCAGCTGGTCGACTCTCGCGCGTACCACGGCCACTTCAGGCGCATGCACCCGGACAAGAATCGAACCAACTACCCGTCTATGAAGTCTCCCTGCATGTGCGAAGTCTGCGGGCGCATGTTCCAGAGCTACGCCCTCCTCAAGGACCACCGCTGGGTCCACACCGGCGAGAGGCCGTTCAGCTGCGACGCGTGCGGCAAATCGTTCCGCATGAAGCAGCGGCTGGTGGCTCATAGGAGGGTGCACAGCGCGGAGAAGGCGACGTACGCGTGCGCTCTGTGCGGGAAGCACTTTAGCACGCACAGCAATCGGCAGCGGCATATGTTTATCCACACGGGCCTGAAGCCGTTTAAGTGCGAGATGTGCGGCAAGGGCTTCAAGCACGCCAGCGAGAAGCGCGCGCACGTCACCTACGTGCACCTCAAGAAGCCCTGGCCCAAGCGCAGCCGCGGCAAGCGGCGGCAACAGGTACCGATGCCGCCCCCGCCGGCCCAAGACGTGAGTCTCCAGCCGCTGTGGCCGCCCTGCGAGCCCAAGCCGCTCGCGCACGACAAGCCGCCCTACTACGCGCTCAAgatgtag
- Protein Sequence
- MRCSVTGCRNDSRYSSKLQGITFHLFPLEPSLRSAWLQAIGREDWQPKEGSTVCSEHFHCDDLYDTRKGLRRKVRPGAVPAVFQVCRICLATGCKLLSMKKYKLEQAYLDLTGVLPYIDDRLPQSVCVECAQRLASCQLLRKRSLRANALLAELLREQDQVTVKTVKVINRKDNQLVSRLAPKVFTPDHYYLTLNHDDVVNQKSTEESVTNAEPEIKDENDCNEIFISEFDDTECNVADNDIDGASDKAFDDDDDDNEFEVTNDDDDKFEVTNDVNDKELEIKNEDDEFDEPKDGDDMVASDSSTDEDLPRGVLRSRLQKRRGKEGKGQKKGKKCKDKKPEQPKVDRRRKPFFNDEDLRETLFTITDLTYDEQVAEIDKRKESSNYKNGVYKCQECYKGFLDEDAYNSHMARHTNESGEYRCHICKTHFKHPHALRKHITAHHTQRFSCKQCPYATTHRQSARLHERWHKGTKYTCPHCPDEFVKFTTYMGHIRIKHPSDFVCQLCGFSFVSEKGILLHKRLKHRQDVQIPEDGPFCELCNLRFIDPEALRRHVSVSARHNTLDKSKRAPNKPTKGRRGRDQRGRERRARDAGEEDAECAGAGRRAEGPIPCEQCGMQLVDSRAYHGHFRRMHPDKNRTNYPSMKSPCMCEVCGRMFQSYALLKDHRWVHTGERPFSCDACGKSFRMKQRLVAHRRVHSAEKATYACALCGKHFSTHSNRQRHMFIHTGLKPFKCEMCGKGFKHASEKRAHVTYVHLKKPWPKRSRGKRRQQVPMPPPPAQDVSLQPLWPPCEPKPLAHDKPPYYALKM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365192;
- 90% Identity
- iTF_00364990;
- 80% Identity
- iTF_00364990;