Cpun023995.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- X-element\ORF2
- Assembly
- GCA_031163375.1
- Location
- CM062105.1:4374168-4388359[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 15 0.04 3.1 9.0 0.6 1 23 309 331 309 331 0.96 2 15 0.00039 0.031 15.4 0.4 2 23 398 419 397 419 0.96 3 15 0.0017 0.13 13.4 0.8 1 23 423 445 423 445 0.98 4 15 0.013 0.99 10.6 0.3 1 23 452 475 452 475 0.95 5 15 0.00019 0.015 16.3 1.7 1 23 510 533 510 533 0.97 6 15 0.01 0.79 10.9 0.8 1 23 1123 1146 1123 1146 0.97 7 15 0.028 2.2 9.6 0.4 2 23 1177 1199 1176 1199 0.92 8 15 0.0054 0.42 11.8 0.2 1 23 1221 1243 1221 1243 0.99 9 15 0.039 3 9.1 0.2 1 21 1247 1267 1247 1270 0.89 10 15 0.0022 0.17 13.0 0.3 1 23 1277 1300 1277 1300 0.97 11 15 1.5 1.1e+02 4.1 3.1 1 20 1306 1325 1306 1329 0.75 12 15 8.6e-08 6.7e-06 26.9 2.0 1 23 1336 1358 1336 1358 0.99 13 15 0.0021 0.17 13.1 2.4 2 23 1365 1386 1364 1386 0.96 14 15 1.6e-05 0.0013 19.7 2.2 1 23 1392 1414 1392 1414 0.98 15 15 3.4e-06 0.00026 21.9 2.0 1 23 1420 1442 1420 1443 0.96
Sequence Information
- Coding Sequence
- ATGTTTATGGACTGTTTCGGTTTGCTGctatCACACCTGGATGGCGAGAGTAAGCAGTGCTGCATCTGCGCGCATTGCGTGGCGCGGCTGCGCGACGCGTGCGCCTTCCGCCGGCAGGTGCTCTGCAGCGAGGAGCTGTTCCTGTCCCGGCTGCACGCCAAGGAGGCAGGTGAGGGTACTGCGGTGCTTGTCCACTGCAGCAGTCGCAGCCGGAAGGCGAGTACGCCTTCCGCCGGCAGGTGCTCTGCAGCGAGGAGCTGTTCCTGTCCCGGCTGCACGCCAAGGAGGCAGGTGCTCTGCAGCGAGGAGCTGTTCCTGTCCCGGCTGCACGCCAAGGAGGCAGGTGAGGGTACTGCGGTGCTTGTCCACTGCAGCAGTCGCAGCCGGAAGGCGAGTACGCCTTCCGCCGGCAGGTGCTCTGCAGCGAGGAGCTGTTCCTGTCCCGGCTGCACGCCAAGGAGGCAGCAGTCGCAGCCGGAAGGCGAGTACGCCTTCCGCCGGCAGGTGCTCTGCAGCGAGGAGCTGTTCCTGTCCCGGCTGCACGCCAAGGAGGCAGGAGCAGAGAATAAGGTGGAAATAGAGGTGAAGGCGGAGCCGGTGTGCGAGCCCGACTCCGATGGAGTAGATGACAGGGACGACTGCGAAGCACCCGCCCAGGAGGCCGAGCGCTCGGAGCCGCCCGAGCCGCCAGCGGCGTCcccgcggcgcacgcgcgccTCCAAGCGCGACCTCGTCGGCAACATGCGGCGCCTGCGCAGCGAGCTGCAGCAGATACTCGACATGCCAGATCCCGAACCGCCGAAGAAGAAGAGGACACCAAAAAAGGACAAGAATCGCCTCGACCACGACAACATGGTATATCTAAACGCGGTCACCATCGTGCAGAACTCGTACGTGTGCCCATTCCTGAACAGAATCAGCAACTACTATTGCTACTACTGCAAAGACCAATTCGTGAACCCAAACGAGTTGAGAGACCACACATTGGCCCACGACCCGAAAACATTCGAAAGCATGATGGAGAACAAAAAGATCCCAAAAATCGATATAACTAGAATCGATTGCCGATTGTGTCACGACAAAATCGATAATATCGATTCACTGAAATGTCACCTCACTACGGCCCACGGGAAAGAGATGCATCCGGTCCAAAATGAGTTTTTAAAATTCCGTTTAACTATGAACAATCTGACGTGTACTGAATGCGATAATTCCTTCCCATATTTTGATATGTTAAAAAAACATATGATCGAACATTTCGGTACCTATGTATGCGACGTGTGTGGCGCTTGCTTCCTAGAACAGAACTCGCTAAAAACTCATATCAAATCACACAATAAAGTGGAAGCGAATTTTCCATGTGAGATCTGCGGTAAGAATCTCAAATCTAAATACAGCAGATATTTACACGTTGCAACGGTGCACGAGAAGAAGCCAACGGTGAATTGTTATAAGTGCGAGGCCAGTTTCTTGTCTTATGCATTAAGGAATCGTCATCTGATCGAAGTGCACGGTGACAAAAGGACTTTTCCGTGTAAATTGTGCGATAAGGTGTATAATAGAAGGAAGACTTTGATGGAACATAATAGGAGGAACCATTTGAAAGTGTACAGGCATCAGTGTCTTCGTGAGAATTGTGCGGTGGGCACGGATCATATTTCCTGTGGTATACTCAAAAGATACGCGCACTATGTAAGCGCCCCCATTTCTCACATATGCAACCTTTCACTATCGACGGGAGTCTTCCCTCACGCTTTTAAGGCAGCTCTCATTAAACCTATCCATAAAGCAGGGGATAAGACAATCGTTGGCAACTATAGACCTATCTCCATCTTACCAGCTATGTCTAAGATCCTAGAGCGCCTAGTGAATACTCGACTGGTGGATTTTCTGGAAAAAAAGAATCTTCTTTCCCCCTCCCAATTTGGTTTCCGTCGTGGTAGGTCCACTGATCAAGCTGTTCACGAGCTAATCACAAACATAATCTCTTCGCTCGAGAAGAGAAGGAAATGTTTAACTCTCTTTATAGATTTGGCCAAGGCGTTCGATACGGTTTCCATTCCCCACCTATTACACAAACTCGAATGCATCGGTGTCAGAGGCCTTCCTTTAAATTTCTTCCAAAGTTATCTGAGCGATAGAACACAAAGAGTCAGGATCTTGGACAGGGTTAGTGACGAGTGCTGTGTGGATTATGGCGTGCCGCAGGGCAGCATATTGGGGCCGACACTTTTCTTAGTTTACATTAACGAGCTATGCCAGATGAAACTAAATGGAGCGAGAGTGATCACCTTCGCTGACGATACTGCCCTATTCTTTGAGGCTGAAACATGGGAGGATGTGTTTGGTCTTGCACAGGCTGGTTTCGCAGAAGTTGCCAAATGGCTTTATTGCAATGTGCTCACACTGAATGTCGCGAAAACCAAGTACATGACCTTTGCCCTACGAAGTGATCACCACCCTCCACCTCAACTTACAATCAAAGCGCACACCACATATTGCAGTAATCTCTCACAGTGCTCCTGCCCCGATATAGCTGAAACGGACACCTTTAAATACCTGGCCGAGGGTCAACACAGGGATTTGACGAAGGAATACTGCTGGAATGGAATACGCGAAGTGTACTCGGATTTGTTTGTTGAATgttttaatttacatCTGTCCCATAAAAAGGAGCTCACGACGCTAATATGTACAGACTGCGTCCTCAGACTCCGTGACGCGAGCAGCTTCAAGATATTGGTTGTGAACACAGAGCAGAGGCTACTGGAAGCTTTGGAGACCGGTCCTAAGCACTCGCCAATAAAGATCCAATGTGAAGAATCTACCAGCGAGCAGACAGTGAAGCTAGAGTCGTTCGACCTGAAGGTTGAATCTTGGGAAGCGTCTACTAGCCGCAGCGAGGACTACTGGACCGAAGACAGTGAGTTCGAAGATGACATCTCCCTATCAAACTCAGCTACAGTGCAGGGCGAGTCAGAACTGCTGCGTCGGTTCCCTGCGCCCGCGCTGCCGACGCGCGCCTCGCTGCGGGCAATCTGCCGCACCTACTACAAACATCTGCAGGCGCTTGATGGTAAACAAATAACAGGAAAATCACTGGAAAAACTGCTTAAAAACCGAACATCGAAACTTAAGccagaaaataaaattactaacgGTGAAACAGCAAATTCTGACGTAGATAAACCACTTGAAACGGCCAAGAAGAAGAGAATACAGCGAACTAAGTATAGAGACAAAGTTATTGATATTGAGAAGGAGAGGAACCCTCATACTGTGGAGAGATTAACACATGCCACGAATATCACTGCTCTACTTGAATTCTCTAACTTAACAGCGTTTAAATCAAAATTCCAAAGAGCATACCCATGCTTCTACTGTGAGAAACTCTTTGAATACTTCGAAGAGTTAAAAGGACACCAGAAATCAGAACACAGCAAGGAGAATATAAGCAAATGCGTGCTGCAGAAGTACAGAGTTGGCAAACCGGATGGTTTGGTCGTGTACGCTGACGTGACCGATTTGAAGTGTACTATTTGTAATAAAGGCATTGAGAGCTTGAAGGAACTCAAAAGTCACTTGACTGAGACGCATGGGAAGAAAATGTATCTAGATTTGTCGGATAGAGTGATACCGTTCAAAGTTTGCGAGAACAACTTTCAGTGTCAGATATGTGGGAATTTGTACGAAACGTTTGGAGCTATAGAGAGGCATATGAACACTCATTACAGGAATTACGTTTGCGAAGAATGTGATTCGGGTTTCGTGACTAAACAGCGGTTGAAGATTCATGGGTATTTGATGCATACGAGGAGACCTAGTCAATATCCTTGTGAGATATGTCAGAAGCAGTTTGCGACTCAGCAGAAGAGGAAGATTCACGTGGAAACCGTGCATGAGAATGTCaagaaatataaatgtaatcGGTGTCCGGAGCGATTTAATGAGTATTTTAGACGGCACAAGCATATGGTTTTGATGCATGGAGTGGCCCCTTTAGAGTACAAATGTAACGTTTGCGATAAGACGTTTGACAGGAGATATGCGCTGTCAACTCACATGAGAACGCACATTCAACAGAAGGATATTCAGTGCGAGATTTGCCCGTATAAATGTTTCACGAACGTAGCGTTAAGGCATCATATGATCAAACATAACGGTGAACGTATACATGAGTGTTCTGTGTGCAAAAAGTCGTATGCGAGAGAAAAGACGTTGAAGGAACATATGAGGATACATACGAATGATAGGAGGTTCGTGTGTCCTGTGTGCGGGCAGGCTTTCATACAAAATTGTAGTTTGAAGAGCCATATTAGGAGTCATCATAAGGAACATGGTTTGATGTAG
- Protein Sequence
- MFMDCFGLLLSHLDGESKQCCICAHCVARLRDACAFRRQVLCSEELFLSRLHAKEAGEGTAVLVHCSSRSRKASTPSAGRCSAARSCSCPGCTPRRQVLCSEELFLSRLHAKEAGEGTAVLVHCSSRSRKASTPSAGRCSAARSCSCPGCTPRRQQSQPEGEYAFRRQVLCSEELFLSRLHAKEAGAENKVEIEVKAEPVCEPDSDGVDDRDDCEAPAQEAERSEPPEPPAASPRRTRASKRDLVGNMRRLRSELQQILDMPDPEPPKKKRTPKKDKNRLDHDNMVYLNAVTIVQNSYVCPFLNRISNYYCYYCKDQFVNPNELRDHTLAHDPKTFESMMENKKIPKIDITRIDCRLCHDKIDNIDSLKCHLTTAHGKEMHPVQNEFLKFRLTMNNLTCTECDNSFPYFDMLKKHMIEHFGTYVCDVCGACFLEQNSLKTHIKSHNKVEANFPCEICGKNLKSKYSRYLHVATVHEKKPTVNCYKCEASFLSYALRNRHLIEVHGDKRTFPCKLCDKVYNRRKTLMEHNRRNHLKVYRHQCLRENCAVGTDHISCGILKRYAHYVSAPISHICNLSLSTGVFPHAFKAALIKPIHKAGDKTIVGNYRPISILPAMSKILERLVNTRLVDFLEKKNLLSPSQFGFRRGRSTDQAVHELITNIISSLEKRRKCLTLFIDLAKAFDTVSIPHLLHKLECIGVRGLPLNFFQSYLSDRTQRVRILDRVSDECCVDYGVPQGSILGPTLFLVYINELCQMKLNGARVITFADDTALFFEAETWEDVFGLAQAGFAEVAKWLYCNVLTLNVAKTKYMTFALRSDHHPPPQLTIKAHTTYCSNLSQCSCPDIAETDTFKYLAEGQHRDLTKEYCWNGIREVYSDLFVECFNLHLSHKKELTTLICTDCVLRLRDASSFKILVVNTEQRLLEALETGPKHSPIKIQCEESTSEQTVKLESFDLKVESWEASTSRSEDYWTEDSEFEDDISLSNSATVQGESELLRRFPAPALPTRASLRAICRTYYKHLQALDGKQITGKSLEKLLKNRTSKLKPENKITNGETANSDVDKPLETAKKKRIQRTKYRDKVIDIEKERNPHTVERLTHATNITALLEFSNLTAFKSKFQRAYPCFYCEKLFEYFEELKGHQKSEHSKENISKCVLQKYRVGKPDGLVVYADVTDLKCTICNKGIESLKELKSHLTETHGKKMYLDLSDRVIPFKVCENNFQCQICGNLYETFGAIERHMNTHYRNYVCEECDSGFVTKQRLKIHGYLMHTRRPSQYPCEICQKQFATQQKRKIHVETVHENVKKYKCNRCPERFNEYFRRHKHMVLMHGVAPLEYKCNVCDKTFDRRYALSTHMRTHIQQKDIQCEICPYKCFTNVALRHHMIKHNGERIHECSVCKKSYAREKTLKEHMRIHTNDRRFVCPVCGQAFIQNCSLKSHIRSHHKEHGLM*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -