Cpun022672.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Conogethes punctiferalis
Gene Symbol
-
Assembly
GCA_031163375.1
Location
CM062103.1:2212705-2215843[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 16 0.0039 0.3 12.2 4.6 1 23 158 181 158 181 0.97
2 16 8.7e-05 0.0068 17.4 2.5 1 23 190 213 190 213 0.96
3 16 0.014 1.1 10.5 0.4 2 23 226 248 226 248 0.97
4 16 0.0014 0.11 13.7 0.9 1 23 257 280 257 280 0.95
5 16 8.4e-06 0.00065 20.6 2.1 1 23 291 314 291 314 0.97
6 16 0.00053 0.041 15.0 0.6 2 23 343 365 342 365 0.96
7 16 0.0014 0.11 13.6 1.2 2 23 375 397 374 397 0.96
8 16 0.056 4.3 8.6 0.6 2 19 402 419 401 422 0.93
9 16 0.00046 0.036 15.2 0.4 2 21 427 446 426 449 0.95
10 16 0.091 7.1 7.9 1.1 3 23 459 480 458 480 0.95
11 16 0.022 1.7 9.9 2.1 1 23 485 508 485 508 0.91
12 16 0.00051 0.04 15.0 2.2 2 23 520 542 519 542 0.94
13 16 0.0037 0.29 12.3 1.5 1 23 564 587 564 588 0.94
14 16 0.0089 0.7 11.1 1.0 2 23 622 643 621 643 0.97
15 16 0.0063 0.49 11.6 0.2 1 23 709 731 709 731 0.97
16 16 0.2 15 6.9 2.0 1 23 737 760 737 760 0.96

Sequence Information

Coding Sequence
ATGTCCATAAAAGAAGAGATAGACTTGCAAATAAAGAAAGAGTTACCCGACATAAAGATAAAACAGGAAGAACCAGATTACTACACGAGGAAAGACCCGACAACGTTCCTGCCCGAGGAGCCAATGTCGTATGAGatcaaaaagaagaagaagaagaaaaaaaagaagttgcAAGAGGATCCGTTTAAAGATTTAGAAATTGAGAATAAGGCGTTTTATATGGAGCCGTCGCTTGAAATGAAGATGGACCCTGAAGTCAATATTAAAGTGGAGAATATAGAGGTCGAATTGGATTTTAATGATTTCGCCAACAACACAGGGCTGATGGTGGAAGGTCCTCATAGTGAAGACAGCCAAGAGCCCATAGTTAAACTGGAGGAACAGAATCGAGAAGCAGTTCTGCTCACCTTCGAGAGTGTCATCAACGAGCACTCGGTCCTCGGCTACTCAGAGATGGAGCCTACAAGGACTTACATGTGCAAAGTCTGTCATCTAGTCTTTCAATCCACCAAAACGCTCCGTATGCACCAGAAAAGGAAGCACAAAATCTATAGACGGTCGTTCAAACACATATGCGATCACTGTGGTATGTCCTATGAAATGAAGAATAGTCTGATAGCTCATATGCGACGAAAGCACGGTCCCGACGCTAATTCTAATGATCATGAGGAGAGGACGTGCGAAATTTGCGCTCTAGTCTTCAAAGGCATGGCTCGCTTGAGAATGCACATGCGAAGAAAGCATGGCTCCTTCGAGGATGCCTTCAAACACGCTTGCAGCGAATGTGGTCTGACTTACGACAAGTACAGGAGCCTAATAGTCCATATTCAAAGGAAACACACCGGTATTAAGCCGATAACCAACCAATGGTTCAACTGTCCGTTCTGTCCGAAGATATTCACAAGACGAGAGACTTATACGCGTCATATTCAGAGGAAGCACAAAGTGTCAGACGAAGATGGAAAGAAGGAGCCGGAAGATGTGCCAGATTTGGAAACTAGTCGAAACCAGGAGACTGGAGAGATCACTTGCAGGGAATGCCCTCTCGTCTTCTCTTCTATCAACTTCTTGAAGTTGCATATGAGAAGGAAACATAATGCCTTGACGGAAGACTTTCGGCTTAAGTGTAGAATTTGCAATCTTTCCTACGATAAAATCGAGAGCCTGAAACGGCATGTTAGAAGGAAGCATGATAAAGGCTCTTACTGTGAAGTTTGCAATAGACAATTTGATACCAGAGAGTCATATCTAAACCATTCCCATGTGAAAGTTATAAAGGAATGCACTATATGCGGGTTGATTTTCGCGTCGCAAGGCGGTTTGGCGAAGCATATAAGATGTACGCATAAAATTGACACGCCTAAAGTGGCTTTTTGCAATATTTGCAATGAGGGCTTTCACGATAGGAGGCTTCTGAAGCCACATTTGTTGAAGGTCCATTTGAAAGCGTCGTACACttgtatttattgcaataaGATTTTCAAAGCGAAGGAGAGCTATAGGAGACACGTGTTATTCAAGCATTCTAATGACAATCCCCTGAATATTAAATCGCAGAAATGTGATCAGTGCTCGGAGACTTTCAGAGATGAATTCGAGTTGTGTCGACACATAAACTTTGCACACCGTACGGAAACAGAGGTGAAACCGGAGTTACTCGAGTTGAAAAAAGAGGAGGACGTGAAAGCATTCCAATGCACAAAGTGTCCGGAGTTGTATGATACATGGGAAATGTTGAAACAGCATTATGAGCAGAATCACCACTTGTCTGGTGAGACCCAGTGCCAAGTCTGCGGAGAAATGATGCCAGGAATGGATCTTCAGAAGCATATAAAAATCGCTCACACGGATAGCATACCGGTTAAATGCAAGTATTGCGAGTTCGAGACGACAAATAAAGCAAGCATGACCCAACACGTGCTACGTCACAAGAACGCAAAAACGTTTCACTGTGATTTCTCCGGATGCAAGTATAAAAGTTACTATGATGGTGCGATGCAGAAACATAAGAAGAAGCATATGGAATTGGGTGTTAAGCTGCAATGTACTAAGTGTCCGTTCCAGACGATGAATAAGTATATACTGCGGTATCACGAAGAAGCTCACTTGACGGGTAAGAAACGGTACAAGTGTGATCAATGTGACTATGCAACGATACTGCCAGCCAACTTAGTCCAGCATAAGTATAAACATTCTAGTGAAAAGCGATTCAAATGTGAGGTGTGTCCGTTCGCTACTAAGTATAATACGTCTTTGCGGTTTCACGTTAAGAAAAAACACTGTGATCTCCCAAGTTTCAGTTGA
Protein Sequence
MSIKEEIDLQIKKELPDIKIKQEEPDYYTRKDPTTFLPEEPMSYEIKKKKKKKKKKLQEDPFKDLEIENKAFYMEPSLEMKMDPEVNIKVENIEVELDFNDFANNTGLMVEGPHSEDSQEPIVKLEEQNREAVLLTFESVINEHSVLGYSEMEPTRTYMCKVCHLVFQSTKTLRMHQKRKHKIYRRSFKHICDHCGMSYEMKNSLIAHMRRKHGPDANSNDHEERTCEICALVFKGMARLRMHMRRKHGSFEDAFKHACSECGLTYDKYRSLIVHIQRKHTGIKPITNQWFNCPFCPKIFTRRETYTRHIQRKHKVSDEDGKKEPEDVPDLETSRNQETGEITCRECPLVFSSINFLKLHMRRKHNALTEDFRLKCRICNLSYDKIESLKRHVRRKHDKGSYCEVCNRQFDTRESYLNHSHVKVIKECTICGLIFASQGGLAKHIRCTHKIDTPKVAFCNICNEGFHDRRLLKPHLLKVHLKASYTCIYCNKIFKAKESYRRHVLFKHSNDNPLNIKSQKCDQCSETFRDEFELCRHINFAHRTETEVKPELLELKKEEDVKAFQCTKCPELYDTWEMLKQHYEQNHHLSGETQCQVCGEMMPGMDLQKHIKIAHTDSIPVKCKYCEFETTNKASMTQHVLRHKNAKTFHCDFSGCKYKSYYDGAMQKHKKKHMELGVKLQCTKCPFQTMNKYILRYHEEAHLTGKKRYKCDQCDYATILPANLVQHKYKHSSEKRFKCEVCPFATKYNTSLRFHVKKKHCDLPSFS*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
iTF_00961192;
90% Identity
-
80% Identity
-