Cpun024347.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- Zeb1
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:543647-553710[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 12 0.00073 0.057 14.5 1.0 1 23 232 254 232 254 0.98 2 12 0.44 35 5.8 0.1 1 23 261 284 261 284 0.94 3 12 1.1 89 4.5 2.8 1 23 288 310 288 310 0.93 4 12 0.037 2.9 9.2 3.7 1 23 315 337 315 338 0.95 5 12 0.0013 0.098 13.8 0.3 1 23 342 365 342 365 0.96 6 12 0.9 70 4.8 2.6 3 20 379 396 377 398 0.92 7 12 0.00079 0.061 14.4 0.1 3 23 409 429 408 429 0.97 8 12 0.0025 0.19 12.9 3.2 2 23 436 458 435 458 0.96 9 12 9.5e-06 0.00074 20.5 1.2 2 23 478 499 477 499 0.97 10 12 5.2e-05 0.0041 18.1 3.4 1 23 505 527 505 527 0.99 11 12 1.2e-05 0.00097 20.1 3.6 1 23 533 555 533 555 0.94 12 12 3.4e-07 2.6e-05 25.0 2.0 1 23 561 584 561 584 0.97
Sequence Information
- Coding Sequence
- ATGGTGAAAGTGCTCGCCTGTCGTGTCTGTTTGTCGACAAACGTGAAACTCTTCAATATGTACAAATTTCGCCTTGATACAGCATATGAAAATCTTACTGGTTATAAGATGAACCGTTCAGACAGTGTGCAGCACGCGTGCAGTATGTGCAGCTCTCTGCTGCTGAAGACTGCTGCCTTCCAGCAGATGTGCTGCAGGTCCCAAGATATGCTCAAGCGCGCCGAGACGAAGGAACACATCACAACAGAATACATACAGTCTCTCAAAATCAATTCTCCGTACTCCAACCTCAAATTCCAACATAACAACACAACAATCGATTACATTTACGATGAACAAGAACTGAAGCAAGAAACATATTGGGATACATGGGACTGTCACGATGATTACACGATGAAACCGATGGAGTCCAGCGATGAAGAGCCTTTATCAACGATAATCGTTAAGAAGTCTAACGATAAAGCTAAGAAAGTTAAGAAAACAGTGAAATTGGAGAGCAAAATTGATAACGATGAATTTGATGCATTAGTTATAGATGAAACCGAAGGTGTTGTCGTGAAAAATGAAGATTTGGATAACGATGAAGATCAGGATTTCAAGGAGGGTGAAGTGGATATCTTCATTTTGACGAAGGAGCAGCAAATTGAGGAAGTACTGTCCAGGAAGACGTCGTTGAATTATCTGAACTCGTTCTACAAGTGCGAGCTATGCTTTAAAGGTTTCATAACGGATGCTACGTACAAGAATCATATGGTTCGGCATGATCCGTCCAGCGGCAGTCACGCGTGCGAGGTGTGTCAGACGCGCTGGGGCAGCGCCCGCGCGCTGAGGGCGCACCTCGCGACCTCACACGAGAGGAAGTTCGTCTGCAAGCTGTGCAACTACGTCTCCAAGTCGAGgcACAGAGCGAAGGAACACTCAAAATGGCATTCAGGCCATATATTTGTCTGCAAGTTTTGCGGTGCGTCCTTTGCCAAATCTACGAGTCACCTGACGCACATTCGGCTCCACCATCCGTCGAAGCATTCGTGCGAAGTGTGCGGGGAGTCGTTCATCGGCGAGAACGGACTCAACATGCACAAGAAGAAGGCTCACAGAGATACGAAGGACCCCGAATCAAAGGCTGAAATGTGTTGTAGCCATTGCAGCGTTCAGTTTCAGTCTGTAGAAGCATTTAAACGGCACCAGAGCTACGGGGAGCCTTGTGATGTTAACATAAGGCCCTGCTTGCAGTGTGGGGAGAGTCTATCTACTGAAGAAGAGTTGAAAGACCATTTGAAGATACATTTGAAAGAAGATCCTGTTAAATGTGAAGAGTGTAACCGCACGTTCGCGCACGAGCGTTCGTACTCCGTGCATCACCAGCGGGTGCacggcgcgcggcggccgcgtGACCCGCGTGACCCGCGGGCGGGGCACGCGACCAGCGTCGTCTGCGAGATATGCGGCAAGAAGTGCATCTCAAACGCTACGCTTCGCTACCATCAGCGTACGCACACGGGCGAACGGCCCTACCAGTGCACCGAGTGCCCCAAGAGGTTCAGCGTCTACCAGAGACTGCAGATTCACCATCGGACACACACTGGGGAAAGGCCTTACAAATGCAGTCACTGCCCAAAGGCGTTCAAGCACAAAGCAGCCTTGAACAGACATGACAGGGTACACACGGGGGCGAAGCCCTACGCCTGCTCGCACTGCGGCAAGTCTTTCTCGCAGTCCAACTCCATGAAACTCCACATCAGAACTGTTCACTTGAAGATGCCTTCACCATACAGGGCTCGGCGAATGCCCACTGAATGA
- Protein Sequence
- MVKVLACRVCLSTNVKLFNMYKFRLDTAYENLTGYKMNRSDSVQHACSMCSSLLLKTAAFQQMCCRSQDMLKRAETKEHITTEYIQSLKINSPYSNLKFQHNNTTIDYIYDEQELKQETYWDTWDCHDDYTMKPMESSDEEPLSTIIVKKSNDKAKKVKKTVKLESKIDNDEFDALVIDETEGVVVKNEDLDNDEDQDFKEGEVDIFILTKEQQIEEVLSRKTSLNYLNSFYKCELCFKGFITDATYKNHMVRHDPSSGSHACEVCQTRWGSARALRAHLATSHERKFVCKLCNYVSKSRHRAKEHSKWHSGHIFVCKFCGASFAKSTSHLTHIRLHHPSKHSCEVCGESFIGENGLNMHKKKAHRDTKDPESKAEMCCSHCSVQFQSVEAFKRHQSYGEPCDVNIRPCLQCGESLSTEEELKDHLKIHLKEDPVKCEECNRTFAHERSYSVHHQRVHGARRPRDPRDPRAGHATSVVCEICGKKCISNATLRYHQRTHTGERPYQCTECPKRFSVYQRLQIHHRTHTGERPYKCSHCPKAFKHKAALNRHDRVHTGAKPYACSHCGKSFSQSNSMKLHIRTVHLKMPSPYRARRMPTE*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -