Cpun013839.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062090.1:12745403-12756819[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.005 0.39 11.9 0.6 1 20 509 528 509 531 0.92 2 17 0.011 0.88 10.8 4.0 1 23 538 561 538 561 0.96 3 17 0.17 14 7.1 2.0 1 23 565 587 565 587 0.91 4 17 0.0092 0.72 11.1 1.0 1 23 592 615 592 615 0.97 5 17 0.032 2.5 9.4 0.8 1 23 619 642 619 642 0.92 6 17 0.032 2.5 9.4 0.8 1 23 659 682 659 682 0.92 7 17 0.032 2.5 9.4 0.8 1 23 699 722 699 722 0.92 8 17 0.032 2.5 9.4 0.8 1 23 739 762 739 762 0.92 9 17 0.032 2.5 9.4 0.8 1 23 779 802 779 802 0.92 10 17 0.032 2.5 9.4 0.8 1 23 819 842 819 842 0.92 11 17 0.032 2.5 9.4 0.8 1 23 859 882 859 882 0.92 12 17 0.0045 0.35 12.0 0.2 1 21 893 913 893 918 0.93 13 17 0.00071 0.055 14.6 0.5 2 23 933 955 933 955 0.95 14 17 7.3e-05 0.0057 17.7 1.0 3 23 1034 1054 1033 1054 0.97 15 17 0.0012 0.094 13.8 0.6 2 23 1061 1082 1060 1082 0.96 16 17 3.4e-07 2.6e-05 25.0 0.9 1 23 1088 1110 1088 1110 0.96 17 17 6.7e-06 0.00053 20.9 3.0 1 23 1116 1139 1116 1139 0.96
Sequence Information
- Coding Sequence
- atggtGTCTAATTGCTGCGTTAAAGGTTGTACCAATAAAAGTAATGTTACTAAGAAGAATTCGCCTGGTATAGCATTTCACGTGTTTCCATCTAAACCAGAGattagaaaaaagtggttgcgGGCCATTAATCGCCCTTATTGGGACCCACCCGGCTCTGCTCGCGTGTGTAGTGAACATTTCAATGCCGATCAGTTAAACCATGATGGCAACAGGATACGGATCGTGGAGGATGCATGCCCAGTCAATGCACTACCAcTTGCCAATTCTTTTTCTACATATGATTTGAAAGTATGCAGGATATGCCTGGCTACTGACAACAAGTTATTCAGTCTAGAATATGGCATATTGAAAGTATGTATGGAGGCCCTTTCTGAAATGAATGATAAACAAGATATGCTGGATCTCCCTCAGTTTGTTTGTTACGAGTGTGGAGCACAACTGGTAAAATACTACAGACTGATTGAGAAAAGTTTGATAGCACAGGCTACATTACTGGACATATTTGCAGACAATGGTCGTatAACAAAACATCTAGTCAGACAAAAAAATAGGAAAGATTTAAATTTGCAGTCATCATTGGGTTATTGTCAACCAGCAGATGTCATTGAGTTTACAAACTATGGTGAccatgatgggatcctggagttCAATGATAATAGTAATGAACCTGAAATTCTTGAATGTCAAGATGAATTTGAAGAAATAGTACAGAATGATAAttcgaataaaaataaacctacaATTAATAgaagtaataaaaaatttggTAGCAATAGTAATAAATCAGATCTGAAGCAATTAGATCCAGATTCTAAAGAAATTACACCGAATGAAGATGCTTATGAACAACAGATGTGTGTTGATCTTAAATCTGAAGTGATCGATATAGATTCTGATAATATAGATGTTGGTATAGATAAACAAAAATTCAAAACTGAAGATATTGATGAAATTAAAccattaataaaaattgtacTTCCAGTTACTAAATATGAAAATGTTGATTCATATACAGATGATTTAGCAGAAACTAGTAAAGGCAGGCGCCAAAATactagtaaattaaaaaaagataacaAACCAAgaactaaaagaaaaaatatagaaTGCTGTAGTGTTGGAAAAGTAGATTCTGAAGATATAACTGAAGTTTTTGGGAGCTTGaatgatgttttaaaaaatattgaggAATCTGATCACAATAGTGAAGATGGTATGGTGAATGCTGGTGATTTATCTGATGGTGATAGCAGTGACGATGAATTTCTTCagagtttgaaaaacaaagccAAACTTAGCAAAAATACTCAAGACAAGAAGGTGATAAATAAAAAGGCTAACACAAAACTAAATGCGTTAGTAAAAAAAGAAGTAAGAGCTATACAACAGGCAGGTCAGCTAGCCACGCCCGTAGATTCTGCTATAGCGAAGTTGAAATGTTTTACTGTGACAAATTTATCTTTAAAGGAACAAATAGAGACATGGAACACGGAAAACGAACAGCCTCCACAGCATTCCCAGTTTGAATGCGCAGTTTGCACAAAGAAATTCGTTAGGAAAAAAGCTTATGAGATGCATCTACCGCGTCATGACCCGTCTCGAGGCGGATTTCAATGTCCTGTGTGTAAAGAGCGGTTTCGGAATTTAACCCGTTTCTGtgcgcacacgacgcgcaaccACGCGAAGAGATATGATTGTCTGGAGTGTTCCAAGGTGTTTCATAATCTCGATAAGGCGCAGCGGCACGAGACGTTCCACTCGGGGCAGGAGTACGCCTGCCCGCACTGCGCGTACCGCACCACGCGCCGCTCCACCGCCTGGGAGCACGTGCGCACgcagcacgcgcacgcgcaccacTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGTCGGCTCTCTCTCGCTCTCTCTCTGTCTCTGTCGCACGCACCACTGCGCCGTCTGCGGACACACCTTCATCAACGCCAAGGGACTCGGCACGCACGCCGCCATGGCGCACCCGGGGCAGGATGGAGAGCCGAAGGACCCGTACCCGTGTGAGGAGTGCAATATCGTGTTCCATTCCGAGGGAGCGCTGCGCGTGCACCGACTGGTGTCGAAGCAACACAAAGACCAGAAAGCGGCCCCCGGCGACCCGCCGCCGAAGCCGACGTGCAAGCGGTGCGGAGCCGTGTTCAGTCGATTACGCGAGCTGTGGGCGCACACGCAGCAGAAACACAAGAAGTACGCGTCCGGCCGCGGCGTCAGAGTCCGCGGACACGACGCGGACCCCTACCCCATGCCCTGCGACCACAGAACTGTGCGCACACGCAGGAGAAGAGACGCGGAGCCCTATCCCAGGCCCTGCGACCACTGCAACATAGAGATCAAATCCCGTTTCGAGCACTGGTGCCACGTCCGCCGGGAACACCCCGAGCACAAGCATCTCTACCGGAGCATCGTCACAGCAATATGCGCTACCTGCGGGAAAGGTTTCAGGAGCAAGACGATGCTGACTCGCCACGAGCAGAAGCACCGCGGTCCCGCGACGCTACAGTGCAGCGCCTGCCCGCGAGCCTTCCACGACGCGTACTCGCTGCGCAAGCACGAGCGAGCGCACGAGGCCGAGCGGCCGCACGCCTGCGACGAGTGCGGGAAGGCCTTCAAGGTCAAGGGCAACCTGGAGCGACACCGCCGGATGCACACCGGCGAGACGCCGTACGAGTGCAAGTACTGCGGCAAGAAGTTCCGCTACTGGGAGAGTCTGACGCTGCACGAGCGGCACATGCACCAGAAGGTGCCGTGGCCGGCGCGCGACCGCTCCGCCCGCGCACGACGCGCGACCAGGGCGGGAGATGACGACTAG
- Protein Sequence
- MVSNCCVKGCTNKSNVTKKNSPGIAFHVFPSKPEIRKKWLRAINRPYWDPPGSARVCSEHFNADQLNHDGNRIRIVEDACPVNALPLANSFSTYDLKVCRICLATDNKLFSLEYGILKVCMEALSEMNDKQDMLDLPQFVCYECGAQLVKYYRLIEKSLIAQATLLDIFADNGRITKHLVRQKNRKDLNLQSSLGYCQPADVIEFTNYGDHDGILEFNDNSNEPEILECQDEFEEIVQNDNSNKNKPTINRSNKKFGSNSNKSDLKQLDPDSKEITPNEDAYEQQMCVDLKSEVIDIDSDNIDVGIDKQKFKTEDIDEIKPLIKIVLPVTKYENVDSYTDDLAETSKGRRQNTSKLKKDNKPRTKRKNIECCSVGKVDSEDITEVFGSLNDVLKNIEESDHNSEDGMVNAGDLSDGDSSDDEFLQSLKNKAKLSKNTQDKKVINKKANTKLNALVKKEVRAIQQAGQLATPVDSAIAKLKCFTVTNLSLKEQIETWNTENEQPPQHSQFECAVCTKKFVRKKAYEMHLPRHDPSRGGFQCPVCKERFRNLTRFCAHTTRNHAKRYDCLECSKVFHNLDKAQRHETFHSGQEYACPHCAYRTTRRSTAWEHVRTQHAHAHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQVGSLSLSLCLCRTHHCAVCGHTFINAKGLGTHAAMAHPGQDGEPKDPYPCEECNIVFHSEGALRVHRLVSKQHKDQKAAPGDPPPKPTCKRCGAVFSRLRELWAHTQQKHKKYASGRGVRVRGHDADPYPMPCDHRTVRTRRRRDAEPYPRPCDHCNIEIKSRFEHWCHVRREHPEHKHLYRSIVTAICATCGKGFRSKTMLTRHEQKHRGPATLQCSACPRAFHDAYSLRKHERAHEAERPHACDECGKAFKVKGNLERHRRMHTGETPYECKYCGKKFRYWESLTLHERHMHQKVPWPARDRSARARRATRAGDDD*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00364996;
- 90% Identity
- iTF_00364996;
- 80% Identity
- iTF_00364996;