Cpun024033.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062105.1:4668264-4671507[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.019 1.4 10.1 0.3 1 23 141 163 141 163 0.96 2 10 0.16 13 7.1 0.1 2 21 191 210 190 211 0.93 3 10 0.00018 0.014 16.5 0.3 3 23 236 256 234 256 0.96 4 10 6.1e-07 4.7e-05 24.2 0.2 1 23 260 282 260 282 0.98 5 10 0.13 10 7.4 1.9 1 23 287 310 287 310 0.94 6 10 0.14 11 7.3 0.4 1 23 316 339 316 339 0.92 7 10 5.6e-06 0.00044 21.2 0.8 1 23 346 369 346 369 0.98 8 10 2.2e-05 0.0017 19.3 2.3 1 23 375 397 375 397 0.98 9 10 6e-05 0.0047 17.9 6.4 1 23 403 425 403 425 0.98 10 10 1.5e-06 0.00012 23.0 1.0 1 23 431 453 431 453 0.98
Sequence Information
- Coding Sequence
- ATGGACCTCGGTGACACAAAGCGGTTGATATGCGAGATGTGCATAGGCCGTCTCCGGGACGCTGTGCAATTCAGGGACCTGTGCGAGCGCTCCCTCAGGATCCTCACGCAGAATGTCAAATCACACGATGCCGAAAAGGCTGCGTCTGTGAAGGGTATTAAAAGCGAGGAATCTATACCTGACGATTCCTTCGACACTCACTTTGATGATTTCTGCGATGAAGAGGACAATATAACACTCAACGAGTTCAAGGTGAAAGATGAGCCCAAAGAAGACAAACCGATCAGAAGAACCAGAAAACTGAAGACCTTACCGAAGAAAGTGCTCAAAGTGTCCATAACCAAAAAGGCTGACTTAGCTGAGACCGAGTCTTTACTCAACAGCGGACTCTTCCCGTTCAAGATGAAGAAAAACGGCTCCTTCGCTTGCCTCATGTGTTCTACCAAAACGCAGGATTTGGACGAACTGAAAAAACACATAGTGAGTCATAGTAAGTCTAACATACGTATAGCGTTCCAGAAAATGCTATTCTCGAGCTACCAGAGATTCTATCAAGTGGCTACGAAGCTCCGTTGCAAGATCTGCACGATAGACGTGTCAGATTTCAACGAGTTGAAGTCCCACGTTCAAAATTGCAGTCAATTGAATATGTACGGTAGGAAATGGAACAGTCTACCGTTCAAATTGGAGAAGGACCAATTGGATTGTCCGGTGTGCAAGAAGACTTTTCTGAATTACGTCAGTTTGAACACACATATGAATGTCCATTATCCGAATTACATATGTGAGAATTGTGGGAAAGCTTTCGCTTCTAAAGCGCGGTTGAGGGGGCACATGAGGACGCATGAAGTGGGAAACTTTCCGTGCAGACATTGCAATGCGACATTCGATCGGGTTACGAAGAGAGAGAACCACGTTTCAAAGGAGCACAAAGCCGGTGTGAGATATGCTTGCAAACGGTGTAATATATCTTTGACATCGTTTTATGCGAGACAAAAGCATTTGGCCGAAGTGCACAACGAGGAGTTGAAACGTTACAAGTGTAAAGTCTGTCCGCAGAGTTATATTACACCGGGACATCTGTCGAGTCATGTACGGAGGGATCATTTGAACGAACGGAATCATAAGTGCGATAAGTGTGATTTGGCTTTTTATACGAAGAACGCGTTGAAAATGCATATGATCAAGCATGACGGTGAGAGGATTCACACGTGTCACATTTGTCAGAAGTCGTATCAGAGGAAGAAGACGTTGAGAGAGCATCTCCGGATACATAACAACGATAAGAGGTTTGTTTGTCCGGTCTGCGGGAGGGCTTTCACGCAGAAATGCACGTTGAAAGGACATCTTAAGGTGCACGAGAGGAAAATTGATGTGGACGATAGAATTGGGCAGCCGTTGCATTCTATATAG
- Protein Sequence
- MDLGDTKRLICEMCIGRLRDAVQFRDLCERSLRILTQNVKSHDAEKAASVKGIKSEESIPDDSFDTHFDDFCDEEDNITLNEFKVKDEPKEDKPIRRTRKLKTLPKKVLKVSITKKADLAETESLLNSGLFPFKMKKNGSFACLMCSTKTQDLDELKKHIVSHSKSNIRIAFQKMLFSSYQRFYQVATKLRCKICTIDVSDFNELKSHVQNCSQLNMYGRKWNSLPFKLEKDQLDCPVCKKTFLNYVSLNTHMNVHYPNYICENCGKAFASKARLRGHMRTHEVGNFPCRHCNATFDRVTKRENHVSKEHKAGVRYACKRCNISLTSFYARQKHLAEVHNEELKRYKCKVCPQSYITPGHLSSHVRRDHLNERNHKCDKCDLAFYTKNALKMHMIKHDGERIHTCHICQKSYQRKKTLREHLRIHNNDKRFVCPVCGRAFTQKCTLKGHLKVHERKIDVDDRIGQPLHSI*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00365152; iTF_00408680; iTF_01071855; iTF_00961210; iTF_00752316;
- 90% Identity
- iTF_00365152;
- 80% Identity
- -