Cpun023980.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Conogethes punctiferalis
Gene Symbol
-
Assembly
GCA_031163375.1
Location
CM062105.1:4258462-4265496[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 28 3.9 3e+02 2.8 0.0 2 23 143 165 142 165 0.94
2 28 5.8 4.5e+02 2.3 1.5 1 23 187 209 187 209 0.96
3 28 6.8e-05 0.0053 17.8 0.8 1 23 213 235 213 235 0.98
4 28 0.049 3.8 8.8 3.9 1 23 240 263 240 263 0.93
5 28 1 78 4.7 1.8 2 23 271 293 270 293 0.94
6 28 0.17 13 7.1 4.1 1 23 300 323 300 323 0.98
7 28 0.001 0.079 14.1 1.6 1 23 329 351 329 351 0.98
8 28 0.00013 0.0098 16.9 3.1 1 23 357 379 357 379 0.99
9 28 0.32 25 6.2 6.1 1 23 385 408 385 408 0.97
10 28 3.9 3e+02 2.8 0.0 2 23 548 570 547 570 0.94
11 28 5.8 4.5e+02 2.3 1.5 1 23 592 614 592 614 0.96
12 28 1.3e-05 0.00098 20.1 0.2 1 23 618 640 618 640 0.98
13 28 0.048 3.8 8.8 1.9 1 23 645 668 645 668 0.92
14 28 0.78 61 5.0 1.7 2 23 676 698 675 698 0.94
15 28 0.1 8.1 7.8 4.5 1 23 705 728 705 728 0.98
16 28 0.0021 0.17 13.1 3.5 1 23 734 756 734 756 0.98
17 28 0.00016 0.013 16.6 2.6 1 23 762 784 762 784 0.99
18 28 0.32 25 6.2 4.1 1 22 790 811 790 811 0.96
19 28 0.029 2.3 9.5 0.2 1 23 869 892 869 892 0.92
20 28 0.095 7.4 7.9 0.2 2 23 919 941 918 941 0.95
21 28 0.015 1.2 10.4 0.3 2 23 964 985 963 985 0.97
22 28 0.2 15 6.9 0.0 1 23 989 1011 989 1011 0.92
23 28 0.0044 0.35 12.1 1.8 1 23 1016 1039 1016 1039 0.96
24 28 0.62 48 5.3 0.9 2 23 1047 1069 1046 1069 0.82
25 28 0.00028 0.021 15.9 1.9 2 23 1077 1099 1076 1099 0.96
26 28 0.00097 0.076 14.1 2.3 1 23 1105 1127 1105 1127 0.97
27 28 2.8e-05 0.0022 19.0 0.9 1 23 1133 1155 1133 1155 0.99
28 28 0.00025 0.019 16.0 3.5 1 23 1161 1184 1161 1184 0.97

Sequence Information

Coding Sequence
ATGTGCCAGTACTGTATCGGCAGCGAAACGGGTTTAGGTATCGTATCCGTGAATAAGGTATTTAATATAATCAGACCAGCCGAGTTCAAGAATGAGCACAAAGACGACTGGACTGTCTCTATAAAGAAGAAAGGGAAAGTGACAAGTGAAGTACTTCTAGACAAAAAGATCAAAGTCGTTAAAGGGAAAGAAATAGACAAACATCTTCACAATCTATACGAGATTCTTTTCAACACAAATGCGACACCGATACGAACTTACAATGGTATCGGATACACTTGCGCTTTTTGCTACGATTCGACATATCCGAGTATGAAAGAGTTGAAAACACATACGTTGTTAACTCATACTGATACTGATAAGAAAAAGTTCATGAAGAAAATTCCGATTACCGCTTACGTGGTGAAATTGGACGTATCAGGGTTGCAGTGTGTAGTATGTTTGGAGAACATAGCGACGCTCGAAGATATGACGAAGCATCTGATTAAGGAGCACAATAGATTCATACATACGGATATAAAGAGTCATATCCTGCCGTTTAGGTTTGAAGAGGGTATGTTTTCGTGCGTTCTCTGCCAGAAGAAGATTGAACATTTCAAAGTGATGCAGGAGCATTTGAACGTGCATTACGGTAGCTATTACTGCAAGATTTGCGGTGGTCAGTTTGTGACGGAGAAGAGTTTGCTGAGCCACATGAAGAGGCATAAGCAGGGCGAGTTTGCGTGTAAAGTGTGCCCGAAAGTCTTCGACACAAATACTAAGAGATGTCACCACGAGAAGTTGGTTCATGGGGGTGATAATAGGAGGAATAAGTGTCCGATTTGCTCGGAGAAGTTTCTGTCGCATTATAAGAAGCAGGAGCACATGGCTCGTGAGCACGGGATGGAGCAGACGTTGTACAAATGTATGGCGTGCGATAGATCGTTTGTGTGTAAGAGCAGGCTGAGTCAGCACAGGAGAAGGGACCATTTATTGGAGAGGCGGCACGAGTGCGCTCAATGTGATAAGAAATTCTTTGCTCTTAGAGAGTTGAAAGATCACATGTTGACCCATACGGGCGTGAAGGCGTTTCAGTGTGACGTGTGTATGAAGTCGTATGGGAGGAAGCATACTTTGAGGCAGCATATGAGGGTACACGAGGACGTTAGACGGTTTAAGTGTGAGTGTTGCGAGCAAGCTTTTGTCCAGAAGTGTAGCTGGAAGAGCCATATGAAGAGTAAGCATGGTATTGTCGTTGGTATCGGCAGCAAAACGGAATTAGGTATCGTATCCGTGAATAAGGTATTTAATATAATCAGACCGGCTGAGGTCAAGAAGGAGCCCAAAGACGACTGGACTGTCTCTATAAAGAAGAAAGGGAAAGTCATACTTCTAGACAAAAAGACCAAAATCGTTAAAGGGAAAGAAATAGACAAACATCTTCACAATCTATACGAGATTCTTCTCAACACAAATGCGACACCGATACGAACATACAATGGTATCGGATACACTTGCGCTTTTTGCTACGATTCGACATATCCGAGTATGAAAGAGTTGAAAACACATACGTTGTTAACTCATAATGATACTGATAAGAAAAAGTTCATGAAGAACTTTCCGATGACCGCTTATGTGGTGAAATTGGACGTATCAGGGTTGCAGTGTGTAGTATGTTTGGAGAACATTGCGACGCTCGAAGATATGACGAAGCATCTGATTAAGGAGCACAATAGATTCATACATACGGATATAAACAGTCATATCCTGCCGTTTAGGTTTGAAGAGGGTATGTTTTCGTGCGTTCTCTGCCAGAAGAAGATTGAGCATTTCAAAGTGATGCAGGAGCATTTGAACGTGCATTACGGTAGCTATAACTGCAAGATTTGCGGTGCTCCGTTTGTGACACAGAGGAATTTGGTGAGCCACGTAAAGAGGCATAAGCAGGGCGAGTTTGCGTGTAAACTGTGCCCGAAGGTCTTCGAGACGAATACTAAGAGATGTGACCATGAGAAGTTGGTTCATGGGGGTGATAATAGGAGGAATAAGTGTCCGATTTGCTCGGAGAAGTTTCTGTCGCATTATAAGAGGCAAGAGCACATGGCTCGTGAGCACGGGATGGAGCAGACGTTGTACAAATGTATGGCTTGCGATAGATCGTTTGTGTGTAAGAGCAGGCTGAGTAAGCACAGGAGAAGGGACCATTTATTGGAGAGGCGGCACGAGTGCGCTCAATGTGATAAGAAGTTCTTCGCTCTGAGAGAGTTGAACCATCACATGTTGACCCATACGGGCGTGAAGGCGTTTCAGTGTGATGTGTGTATGAAGTCGTATGGGAGGAAGCATACTTTGAGGGAGCATATGAGGATACACGAGGACGATAGGCGGTTTAAGTGTGAGTGTTGCGAGCAAGCGTTTGTCCAGAAGTGTAGCTGGAAGAGCCATATGAGGAGTATACAACTGAAACGTAGCGTGAAAACCGAAAAGGTTATACTATTCGGGAGGTACGTACAGAGCAAGGAGTATTTGCGTCAGATACCCGAGTTGGAAAAGCATCGTGCTAACGTGCGAATGGTATTGCAATACTCGAACGCCACGCCGATACGATGCCGTGGCGGTATTGGGTACGCTTGCTGCTTCTGCCCCGAACAATACCCAGACCCGGCTGACCTGAAGACCCACACAATAGCCCAACACGACGACAAAGCGAAAGTCAACTTCATGAAGGACAAAATGATGTACTCTTTCTTAGTAAAACTGGATATAACCAATCTCAAATGCAGCTTATGCCAGCGCGATCTGAACACGTTAGAGGAATTCATGGCGCATCTGATCAAGGAGCACGATAAGAAACTGTTCACGGATATCAAAAACCACATGCTACCGTTCAAGTTCGAAGACAGCACGCTACGTTGCGTGATGTGCCCGAACATTTTCAACAAGTTCAAAGCGCTTTTGGAACACATGAACACGCATTACAGGAATTACGTGTGCGACGTTTGCGATGCTGGCTTCGTAACAAGAAACATTCTGGTCAATCACACAGAAGCGCACAAGACTGGCGTGTTCCAATGCGAGTATTGTGAAAAGGTCTTCGATACGCTTAGAAAGAAGAAGTCCCACGAGAAATCTGTACACATACACTGCAATTTGCTGAACAAATGCGGTTATTGCAATGAGAAGTTCAAGGATTACAGGCGGAAGGACGATCATATAGCCAAAGTTCATGGGATACCGATGCTGGCGTTGAAATGCCAAGCGTGCGATAAGACGTTCGCCCATAAGACTGCTCTAACGATTCACACGAAGAGGGATCATCTTATGGAGAGACGGCACAAGTGTCCTCAGTGTGATATGAAGTTCTTTAAGACGGGCGAATTGAAGGAACATATGGTGAAGCATACGGGAATGAGGAGCTTTCAATGCGGTGTCTGTTTGAAGTCTTATGGACGGAAGAAGACTTTGACTGAGCATATGAGGATACATGCAGATGATAGGCGGTTTAAGTGCGAGCACTGTGGGCAGGCGTTCGTTCAGAAGTGCAGTTGGAAAGGGCATATGCGAGCGAAGCATGGAGACTTGATATAA
Protein Sequence
MCQYCIGSETGLGIVSVNKVFNIIRPAEFKNEHKDDWTVSIKKKGKVTSEVLLDKKIKVVKGKEIDKHLHNLYEILFNTNATPIRTYNGIGYTCAFCYDSTYPSMKELKTHTLLTHTDTDKKKFMKKIPITAYVVKLDVSGLQCVVCLENIATLEDMTKHLIKEHNRFIHTDIKSHILPFRFEEGMFSCVLCQKKIEHFKVMQEHLNVHYGSYYCKICGGQFVTEKSLLSHMKRHKQGEFACKVCPKVFDTNTKRCHHEKLVHGGDNRRNKCPICSEKFLSHYKKQEHMAREHGMEQTLYKCMACDRSFVCKSRLSQHRRRDHLLERRHECAQCDKKFFALRELKDHMLTHTGVKAFQCDVCMKSYGRKHTLRQHMRVHEDVRRFKCECCEQAFVQKCSWKSHMKSKHGIVVGIGSKTELGIVSVNKVFNIIRPAEVKKEPKDDWTVSIKKKGKVILLDKKTKIVKGKEIDKHLHNLYEILLNTNATPIRTYNGIGYTCAFCYDSTYPSMKELKTHTLLTHNDTDKKKFMKNFPMTAYVVKLDVSGLQCVVCLENIATLEDMTKHLIKEHNRFIHTDINSHILPFRFEEGMFSCVLCQKKIEHFKVMQEHLNVHYGSYNCKICGAPFVTQRNLVSHVKRHKQGEFACKLCPKVFETNTKRCDHEKLVHGGDNRRNKCPICSEKFLSHYKRQEHMAREHGMEQTLYKCMACDRSFVCKSRLSKHRRRDHLLERRHECAQCDKKFFALRELNHHMLTHTGVKAFQCDVCMKSYGRKHTLREHMRIHEDDRRFKCECCEQAFVQKCSWKSHMRSIQLKRSVKTEKVILFGRYVQSKEYLRQIPELEKHRANVRMVLQYSNATPIRCRGGIGYACCFCPEQYPDPADLKTHTIAQHDDKAKVNFMKDKMMYSFLVKLDITNLKCSLCQRDLNTLEEFMAHLIKEHDKKLFTDIKNHMLPFKFEDSTLRCVMCPNIFNKFKALLEHMNTHYRNYVCDVCDAGFVTRNILVNHTEAHKTGVFQCEYCEKVFDTLRKKKSHEKSVHIHCNLLNKCGYCNEKFKDYRRKDDHIAKVHGIPMLALKCQACDKTFAHKTALTIHTKRDHLMERRHKCPQCDMKFFKTGELKEHMVKHTGMRSFQCGVCLKSYGRKKTLTEHMRIHADDRRFKCEHCGQAFVQKCSWKGHMRAKHGDLI*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-