Cpun022587.1


Basic Information
Transcription Factor Domain
Sequence Information
Similer Transcription Factors

Basic Information

Insect
Conogethes punctiferalis
Gene Symbol
-
Assembly
GCA_031163375.1
Location
CM062103.1:324920-352378[-]

Transcription Factor Domain

TF Family
zf-C2H2
Domain
zf-C2H2 domain
PFAM
PF00096
TF Group
Zinc-Coordinating Group
Description
The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc
1 12 2 1.5e+02 3.7 1.3 2 17 57 72 56 73 0.89
2 12 0.00063 0.05 14.7 0.3 1 23 502 524 502 524 0.96
3 12 0.002 0.16 13.1 0.9 1 23 538 560 538 560 0.97
4 12 4.6e-06 0.00036 21.5 1.0 1 23 566 588 566 588 0.98
5 12 2.7e-05 0.0021 19.0 1.0 1 23 595 617 595 617 0.99
6 12 6.5e-05 0.005 17.8 1.8 1 19 623 641 623 645 0.93
7 12 1.5e-05 0.0011 19.9 0.4 1 23 651 673 651 673 0.97
8 12 3.4e-06 0.00026 21.9 2.0 1 23 679 702 679 702 0.96
9 12 5.6e-05 0.0044 18.0 2.3 1 23 708 731 708 731 0.95
10 12 6.7e-05 0.0052 17.8 2.3 2 23 738 759 737 759 0.97
11 12 5.9e-05 0.0046 18.0 0.8 1 23 765 787 765 787 0.96
12 12 0.13 9.8 7.5 0.0 1 21 793 813 793 814 0.95

Sequence Information

Coding Sequence
atgaaccaaaattgttttatATGCAATCTCCCTATTGGGATATCGGCACGGAACTGTGTCAACATCTTCGGGGAAACTAGTGGTCTGCAATTGGGAAAGAAATTACATGAAGTTATATCTGATGTTGTCGAGTCTACGATAGTTGAGACAACGGGACAATCGAGTGTAGTCTGCAAGAAGTGCCAGAAGGCCTGTACAGAGTATGACACATTAAAAACTaggTTACAAACAATTAAATCGGAAATCCAAGATAATTACAAGAAGACTTTACAGCTGCGCAACAAGACGGAGTCTCCGAAGTCTAAGGAGTCCAAAATATTGGTGTTGCCAGCGTGCAAACTGCAGCCGTTGCCTGCTAACTATGTGATAGGCATGGGGAAGTCCAACATTGGCCTGCCAAAGATTGATTCTGTAGGTTCTTTGTTAACCGGTTTGTATAAGGTACCAAGCGATTTAAAAGTACCCGTCAGTTCATCGGCTATAATGCAATCTGTCAAAATGTCTGCTGCAAACAGCCCCATAAAGATATCAACATCCGATTTAGTCACATCCCCATCAAAAGTCACAGATACAAGTATCAGTGACAAAGTAGTCGTGACATCTTTAATGATGCCTACGCTCACACAGAATTCAATCGTTACGAAGAAGACTAAGAATCCGGTGATGAGTTTCAACGTCAACTTGCCTAAAGATTTTCTGTCATCAGCGGTGTTGACACCGATGTCCAACGCGAAGAGTGATATTAAGAAGAAGGAAATTGTTATTGAAGGTGATTTGAATGATGAAGCGGAGAATAATGATGAACATCCTATGGAGATTGATGAGGattGTTCATTAGCGGGTGTCCCTGTAAGCTCCAGTGTTAGCAGTAAATTAGTATTCGAGggTGATAAAATCGATTTGAAATCGAAGAACAGTACGAATTTCTTCGATGTCGGCTTGCTGTTAGAGGGAGGCGCCGAAACGCGCTCGAGCGAGAGAGAGGACAAGTTCATACTGGACAAGTTGATATtggatgatgaagatgatgatgatgatgaacAGACCATAGTGATGGAGAACGGCGCGACGCTGATCCGAATGGGAGGCTCCCGGCAACTGTTGTATGACCCCGCCCACTACGCCCTCGTGCCCGCCGACGGGACCGACCCGGACCAAGACAACGACACACACGATTCCAACGACGAATCTCAAATAGAGCTTCAAGTGTCCGGCGATGAAGAGACTGCCAACGCGATCATAGCAGCTGCGCAGGAGCAGGGTGGTGCGTTCATAAAAGTGGAGTCTGGAGAGATGTACAGAGTCAAGTCGGTGCAGAGCAAGACTGAGGAAGAGCTGGACCCCGCGATACATctTACAAACATTGTCGAAGCTTTAGATGGCGGTATCTTCAAGTGCTTGCTTTGTGAAAAGAATAAAGATAatgACAGCAAGTTTATCTCGGTGACTGGCGACGCGGAGTTCACGATGAGCCACCTGCGGGGCACGCACAGCGCTCGCCTGTACATCTGCCAGGTCTGCGGACACGTCCTACGGCGCAGGAGCGAGTATTCCGCGCATATAGaGGAACACGCAAAAAAGAACAAGACAGTAGTGAACAAAACGAAGCTCCACTCGTGCGCGGTGTGCGCTAAGACGTACAACTCGCGAACACTGCTCGGCGAACACATGAACACGCACACCGGCTCGCGGCCCTACGCCTGCGCCGTCTGCCACAAGGGCTTCGCCTCCAAGTACACGCTGCAGGCCCATCTGAAGACGCACGAGGAGCGGCCGCGTCCATTCAAGTGTAACCAGTGCGGGAAGGCTTTCCTCACTCAACAGAATCTGGCGCAGCATGAGAAGACTCATTCCGGCGTCAAGGAGTTCGTCTGCAAGATGTGCGATAAGGCGTTCGCGACACAGCACAACCTAGAAGTTCACTGTGTGGTACACACTGGCAGAAAACCTTTCTTCTGTTCTGTGTGCAATAAAGGCTTCGCGAGACGAGCTGAGGTCAAAGACCATATGAGGATACATACGGGCGAACGTCCGTTCACGTGCGACATATGCGGCGCGACGTTCACGCAGCGCTCGAACCTGCACTCGCACAAGCGAGCCACGCACTACGACGACAAGCGGTACCGCTGCGACCACTGCCCCAAGCGGTTTAAGCGACGCAGACTGCTCGACTACCACATACAGGCGGTGCACACGGGCGAACGACCGCTCAAATGCGACATCTGTCACGCCACGTTCGTCTACCCCGAGCACTACAAGAAACACGTGCGGATACACAGCGGCGAGAAGCCTTACATCTGCGAGGTTTGCGGCAAATCGTTCAACTCCCGCGACAACCGCAACATGCATCGCTTCGTTCACAGCGACAAGAAGCCTTACGAGTGTCTCGCGTGCGGCGCCGGGTATATGCGCAAGCAGCTGCTGTACGCGCATATGAACAGCACAGGCATAACCACGCCAATAGTGGACGTGCAAGCGCTAGAGATTAAAACAACAAATCTCACAGAAACTcTTATAACGATAGATGAGAAGGGCAAACCGATGAGATTGATCCAAGTGCAGCTCCCGGACGGGAAGAGTGGATGGGTGGCACTCAACAATTACCTGGAAGAAGGCCCTTAG
Protein Sequence
MNQNCFICNLPIGISARNCVNIFGETSGLQLGKKLHEVISDVVESTIVETTGQSSVVCKKCQKACTEYDTLKTRLQTIKSEIQDNYKKTLQLRNKTESPKSKESKILVLPACKLQPLPANYVIGMGKSNIGLPKIDSVGSLLTGLYKVPSDLKVPVSSSAIMQSVKMSAANSPIKISTSDLVTSPSKVTDTSISDKVVVTSLMMPTLTQNSIVTKKTKNPVMSFNVNLPKDFLSSAVLTPMSNAKSDIKKKEIVIEGDLNDEAENNDEHPMEIDEDCSLAGVPVSSSVSSKLVFEGDKIDLKSKNSTNFFDVGLLLEGGAETRSSEREDKFILDKLILDDEDDDDDEQTIVMENGATLIRMGGSRQLLYDPAHYALVPADGTDPDQDNDTHDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMYRVKSVQSKTEEELDPAIHLTNIVEALDGGIFKCLLCEKNKDNDSKFISVTGDAEFTMSHLRGTHSARLYICQVCGHVLRRRSEYSAHIEEHAKKNKTVVNKTKLHSCAVCAKTYNSRTLLGEHMNTHTGSRPYACAVCHKGFASKYTLQAHLKTHEERPRPFKCNQCGKAFLTQQNLAQHEKTHSGVKEFVCKMCDKAFATQHNLEVHCVVHTGRKPFFCSVCNKGFARRAEVKDHMRIHTGERPFTCDICGATFTQRSNLHSHKRATHYDDKRYRCDHCPKRFKRRRLLDYHIQAVHTGERPLKCDICHATFVYPEHYKKHVRIHSGEKPYICEVCGKSFNSRDNRNMHRFVHSDKKPYECLACGAGYMRKQLLYAHMNSTGITTPIVDVQALEIKTTNLTETLITIDEKGKPMRLIQVQLPDGKSGWVALNNYLEEGP*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity
-
90% Identity
-
80% Identity
-