Cpun024020.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062105.1:4584177-4588049[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 17 0.014 1.1 10.5 2.3 1 23 141 164 141 164 0.96 2 17 0.0045 0.35 12.0 0.1 1 23 233 255 233 255 0.98 3 17 0.048 3.7 8.8 0.8 1 23 259 281 259 281 0.97 4 17 0.00068 0.053 14.6 0.2 1 23 286 309 286 309 0.93 5 17 0.00019 0.014 16.4 0.6 2 23 316 338 316 338 0.97 6 17 7.1e-05 0.0055 17.7 1.6 1 23 345 368 345 368 0.98 7 17 0.0013 0.1 13.7 8.4 2 23 375 396 375 396 0.98 8 17 0.18 14 7.0 0.4 1 23 539 562 539 562 0.93 9 17 2.9 2.3e+02 3.2 0.2 2 23 588 609 587 609 0.93 10 17 0.045 3.5 8.9 0.5 1 23 631 653 631 653 0.98 11 17 3e-05 0.0023 18.9 0.4 1 23 657 679 657 679 0.99 12 17 6.9e-05 0.0053 17.8 0.2 1 23 684 707 684 707 0.96 13 17 5.6e-05 0.0044 18.0 0.5 2 23 714 736 714 736 0.97 14 17 9.6e-05 0.0075 17.3 1.1 1 23 743 766 743 766 0.98 15 17 0.0038 0.3 12.3 3.9 2 23 773 794 772 794 0.96 16 17 1.4e-07 1.1e-05 26.2 1.0 1 23 800 822 800 822 0.99 17 17 0.22 17 6.7 0.6 3 23 828 849 826 849 0.95
Sequence Information
- Coding Sequence
- ATGAATAATGCCATGGGAATCGTCCAAGCGAGCGATTCGTCGATCACAATCAAAGATGAAGACGGCGATGACATCACTCTGACACTCCTCAAAACGCCTATAAGCCTTGATTCACTCAAATGGGAACACGAAGAGACACACAAAGTTGTCGAAGAAAGACAGATAAAATCAAAGAAAAACGCGCAGAAAAGTAAAAAGAATATCACAGAAGTGTCTCTTTTGAAAGAACCGATTTCTCTGGACGACTGGAGCAAAGAATCACTTCAAAACGAGgttacttataatgtcaaaaccgTGCAAGGTTCCTTCGCTTGCAGACGTTCCAGAGAGACCAAACCGCTTTCACGAACTTGGAAAAGCCAAGCTTTGATTATATTCGAAAACTCTTTCGCTTACCCCTTTGTATATTCCGGCAATAAGTATAAATGTTTCGTTTGCTCAAAAACTTTCTTAGACCCTCATTTACTGAAAGAACATTCCACAACAGAGCATTCTTCAAGAGACTTGCAAAGGGTATTAAGTAACCGAATGAAGGAAAATAATTTGAAGGTGGACATAACGCATTTACAATGCAAACTCTGTCTAGATACTATACCAGATTTAAATACTCTGAAATCCCATTTAATAGGACACGGAAAAGACTTGGACTTGAATTTGAAAGACAATTTGATACCTTTCAAACTAAGCGGGGATACTTTTGAGTGCCAAATTTGCGGGGAAGGCTTCTTAAAGCTGAGGCTTCTCATAATACACATGAGTAAACATTTCAGTAATTTCAGTTGTGAAGTGTGCGGCTCTGCGTTTGTTTCCATGAATCTGCTAAAATGCCATCAACAGATACATGTTGCAGGCAACTTTCCTTGTGAAAAGTGTGACAAAGTATTCAGTAATGCTGCCAAGAAGAGTTTACACGTTCGAGGCGTGCACTTAAAGAAGTTGCCGAGACGTTGCCCAATTTGTCCTGAAAGATTCAACTCTGACTACCAAAGGACGAGGCATTTGCGAACAGTACATAATCAGAGTACTGCGTCTTATAGGTGTGAAACCTGTGGACGGGAGTACGATTTGAAATACCATCTTTTGACCCATATAAGATCTGTTCATTTAAAGGAACGGAATGAGGAATGTCATATTTGTCATTCTAGGTTTTTCTCCAAATATCATTTGTCGAGGCATATGATGACGCATACTGGAACCATCCAAGCGAGCGATTCGTCGATCACAATCAAAGATGAAGACGGCGATGACATCACTCTGACGCTCCTCAAAACGCCAATAAGCCTTGACACACTCAAATGGGAATACGAGGCTCAAAGCCCTAGAGAAGAAAGACAGACAGCCAAAACAGAACGAAAAGTCACAAAACTGCAGTTAATCAAACGAAAAAAGAACGTCACTGAAGTTTCTCTCTTAAAGGAACCAATTTCCTTGGACAGCTGGAGCAAAGAGTCTATTCAAAGTGAAGTTACATATAATGTCAAGACCGTACAAGGCTCTTACTCCTCCAGATCCCCGAGGAAAGCAAAAGCTATGGAGTTCCAAGCGTGGAAAAGTCAAGCTTTGATCATATTCGAGAATTCCTTTGCTTACCCTTTCGTGCATTCTGGAAACAAGTACAAATGCTTCGTATGCGCCAAACCCTTTTTAGATCCGAATTTGTTAAAGGAGCATTCTACTAAGGAGCATTCTTTAAAAGATGTGCAAAGGGAATTGAATAACAGAATGAGGGAAAAGAATCTTAAGGTCGACATAACGCATTTACAATGCAAACTATGCCTGGACACTTTACCTGATTtgaatactcttaaaattcacTTGAAAGGTCACGGAAAGAACATTGACGTGAACTTGAAGGACAATTTGATCCCTTTCAGATTAAACGGGGAGACATTTGAGTGCCAAATTTGCAGAGAAAACTTCTTGAAACTGAGACTCCTCATTATACACATGAGTAAACACTTCAACAATTACAGTTGTGAAGTGTGCGGTTCAGTGTTCATTTCTATGAATCTACTGAAACGTCATCAACAGACACATGTCTCGGGAAACTATCCGTGCGATAGATGCGATAAAGTGTTCAGCAATGCAGCGAAAAGGACACTGCATATGCGCGGCGTACATCTGAAGCAGTTGCCGAGACGCTGCCCCATATGTCCGGAACGATTCAACTCGAATTATCAGAGAACTAAGCATTTACGCATAGTACATAATCAAACTACTGGATTGTTTAGATGCGAGACTTGCGGACGGGAGTACGACTTGAAATATCATCTCTTAATCCATATAAGATCAGTGCATCTTCAAGAAAGGAACCAGGAGTGTCCAATTTGTCATTCTCGGTTTTTCTCCAAGTACTGTCTGTCCAGGCATATGGTTATCCATACTGGGGAGAAGAATTTCAAGTGTAACATATGCGGGAAAGCTTATGCTAGACGGAAGAATCTTAGGGAGCATTATAGGGTGCATGAAATGAGTCAAAATTGCTCCGTTTGTGGTCATAATTGTCTTGATCAAGCGTCTTTAGGGGCCCATATGAATGTAGCTCATGGTATTTTGTAA
- Protein Sequence
- MNNAMGIVQASDSSITIKDEDGDDITLTLLKTPISLDSLKWEHEETHKVVEERQIKSKKNAQKSKKNITEVSLLKEPISLDDWSKESLQNEVTYNVKTVQGSFACRRSRETKPLSRTWKSQALIIFENSFAYPFVYSGNKYKCFVCSKTFLDPHLLKEHSTTEHSSRDLQRVLSNRMKENNLKVDITHLQCKLCLDTIPDLNTLKSHLIGHGKDLDLNLKDNLIPFKLSGDTFECQICGEGFLKLRLLIIHMSKHFSNFSCEVCGSAFVSMNLLKCHQQIHVAGNFPCEKCDKVFSNAAKKSLHVRGVHLKKLPRRCPICPERFNSDYQRTRHLRTVHNQSTASYRCETCGREYDLKYHLLTHIRSVHLKERNEECHICHSRFFSKYHLSRHMMTHTGTIQASDSSITIKDEDGDDITLTLLKTPISLDTLKWEYEAQSPREERQTAKTERKVTKLQLIKRKKNVTEVSLLKEPISLDSWSKESIQSEVTYNVKTVQGSYSSRSPRKAKAMEFQAWKSQALIIFENSFAYPFVHSGNKYKCFVCAKPFLDPNLLKEHSTKEHSLKDVQRELNNRMREKNLKVDITHLQCKLCLDTLPDLNTLKIHLKGHGKNIDVNLKDNLIPFRLNGETFECQICRENFLKLRLLIIHMSKHFNNYSCEVCGSVFISMNLLKRHQQTHVSGNYPCDRCDKVFSNAAKRTLHMRGVHLKQLPRRCPICPERFNSNYQRTKHLRIVHNQTTGLFRCETCGREYDLKYHLLIHIRSVHLQERNQECPICHSRFFSKYCLSRHMVIHTGEKNFKCNICGKAYARRKNLREHYRVHEMSQNCSVCGHNCLDQASLGAHMNVAHGIL*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -