Basic Information

Insect: Conogethes punctiferalis
Gene Symbol: -
Assembly: GCA_031163375.1
Location: CM062106.1:3974945-3984136[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 15 0.18 14 7.0 2.1 1 23 172 194 172 194 0.95

2 15 0.0004 0.031 15.3 0.1 1 23 212 234 212 234 0.93

3 15 0.44 34 5.8 0.1 6 23 243 261 240 261 0.93

4 15 0.00052 0.04 15.0 0.2 1 23 355 377 355 377 0.97

5 15 2.7e-05 0.0021 19.0 0.7 1 23 383 405 383 405 0.99

6 15 1.8e-06 0.00014 22.8 1.7 1 23 411 433 411 433 0.98

7 15 0.0016 0.12 13.5 0.5 1 23 439 461 439 461 0.98

8 15 1.8e-05 0.0014 19.6 0.1 1 23 467 489 467 489 0.99

9 15 4.4e-06 0.00034 21.5 3.3 1 23 495 518 495 518 0.97

10 15 2.7e-06 0.00021 22.2 0.3 1 23 524 546 524 546 0.98

11 15 0.014 1.1 10.5 3.9 1 23 553 576 553 576 0.96

12 15 3.7e-05 0.0029 18.6 0.7 1 23 582 605 582 605 0.92

13 15 0.0015 0.12 13.5 2.0 1 23 611 633 611 634 0.95

14 15 0.99 77 4.7 0.1 2 20 638 656 637 658 0.92

15 15 2 1.5e+02 3.7 0.0 2 10 662 670 661 675 0.93

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	15	0.18	14	7.0	2.1	1	23	172	194	172	194	0.95
2	15	0.0004	0.031	15.3	0.1	1	23	212	234	212	234	0.93
3	15	0.44	34	5.8	0.1	6	23	243	261	240	261	0.93
4	15	0.00052	0.04	15.0	0.2	1	23	355	377	355	377	0.97
5	15	2.7e-05	0.0021	19.0	0.7	1	23	383	405	383	405	0.99
6	15	1.8e-06	0.00014	22.8	1.7	1	23	411	433	411	433	0.98
7	15	0.0016	0.12	13.5	0.5	1	23	439	461	439	461	0.98
8	15	1.8e-05	0.0014	19.6	0.1	1	23	467	489	467	489	0.99
9	15	4.4e-06	0.00034	21.5	3.3	1	23	495	518	495	518	0.97
10	15	2.7e-06	0.00021	22.2	0.3	1	23	524	546	524	546	0.98
11	15	0.014	1.1	10.5	3.9	1	23	553	576	553	576	0.96
12	15	3.7e-05	0.0029	18.6	0.7	1	23	582	605	582	605	0.92
13	15	0.0015	0.12	13.5	2.0	1	23	611	633	611	634	0.95
14	15	0.99	77	4.7	0.1	2	20	638	656	637	658	0.92
15	15	2	1.5e+02	3.7	0.0	2	10	662	670	661	675	0.93

Sequence Information

Coding Sequence: ATGCTTGAGAAAAATACTGATAACATGTctgataaagaaaatgaaaggATCCCTGACAATGAAGAGATAATAATTGAAGAGCCTTTGGACAACATTCTAAATAAACCTAATGAAAATTTTAAGTGTGCTGTAATGGACGAAAAGATCGAGCAGGAATTTCTGGACAATGCTTGTAGTAAAGAAATTAAAGATAATGACGAAGGAATGGTTGGCCTGGGAGATTTTGTCTACATACCTGTTGAACATATAGAGGATCGTGCTGATATTGATGACAAAATGGACCAGGAAAATCTAGACAATGTGTCTAATAAAGGAAGTATGGATtttaGATGTTCTGATGTTGAAGAAAAGATGGGTCAAGAAAATTTTGTCTACATACCAAATGAACAAATGGAGAATATTAGGAGTTCTGATATTGACGACAAAACACTCAAGGAAATTTCTGATAACTTGGCCATTGAAAAAATGGAAAACATGAAATCAATTCAAGTTGTTTTGGAGAGAATCAAATACTACGATTGCGATCTCTGTAGATGTGTGTTTTTAAATCGAAGCCAGCTCACTCTACATTCCGCTAAGCACGTAAAGCCtaaGTTGGAATCAAACGTGGACCCCGATCGTTTCGTGAAACGTTTCAAATGCAGCGAGTGCGGCCTCAAGTTCGTCCAAATCAGCACTCTCGAGGAGCACGCCGTCCTGCACCAGCCCTACCCGCACGTCTGCCGCTGCGGCATCGGCTACTACCGCAAGCAGGACCTCGCCGCACACAAAAACCTACTCCACGCCAACGAAATAAGGAAGGAAATCGCCCACCTCACCACGCGGGAGCAGCGCGCCATAGAAAACGAAATGTGGGTACCCCACACCACGTACAAAGGCCGGAAGGTCAAAAGAGACGTGGAATTCCAATTGGGAGACGTCAAAGAGGAAATAATAGAGGAAACGGTCGGCCCCAGACCGCGCCTCAAAGCGGAACTAGTAGTCAAGTCGAAATCTAAACCCAAAGCGAGATCTCCGAACACGAATGCTACCCTCAAATTTGTTAAGAATAAAGATAACACATACACCTGTCCCATTTGCTTGAAAAAATATAACTCGCTATCAAGTGTACAGATACATCAGGTCGTGCATACCAAGGAGAAGCGTTTTAAGTGCGATATCTGCGAATCACGGTTCACCCAGCAAGGAGCGTTGAATTTGCACCTCAAAAGGCACACGGGGATCAAAGAGTACGCCTGCCCCCACTGCGGTAAAGAGTTCTTTGGAAAATCTAACATGTACAATCATATTAGGACACACACCGGTGAGCGTCCGTACAATTGCGCCTTTTGTGCGAAAACGTTCGGCGACCAGTCGGCCCGTCAGAGGCACGAGCGTATTCACACTGGCGTCAAACCGTACACGTGTAAGTACTGCGGCAAGGGCTTCGGCGACGCGGGCGCGTACGGCAGACACGTCAGAATACACGAGAACGACAGGCGGCACAAGTGCGAAATGTGCAATAAGAAATTTTACGTAAAAGACGATCTGAGAAAACATATGAATTCCGTTCATAGCTACGCTAAGAACTTCGTGTGTAAATATTGCCCCAAAAGTTTTGCGTTGAAAGTGTATCTTGATGCTCATATGAGAATACATAAGAAAGATAGGAAATATTACGAGTGTGATCATTGTGGGCTCAGATCCTATGCTAAGTGTCATTTAGAAAGGCACATTCTTAACGTGCACTTTACAAGGAGAGACCATGTTTGTCCGGATTGCGGTAGGGCTTTCTTCAACAAAATTACCCTCAAGAATCACAGGACTGCCGTACATGGGCGGTCGAAAGAATTCGAGTGCGACCACTGTGGCGacaaatttagtttaaaatcagGTGTCCAGAAACACATCATGGCTCATCACCTTGGCTTACAATGTGAGGCGTGTAAGAAGCCTCTCGCTGATAATCGTACATTCCAGGAGCATAAAATAAAAGGCTGCATTCAATGCGATATGTGCGGAAAATATTTCCTTGCACAAGCCCTGTATAGACGGGAAGTGAGCAGGGAAGTGGGAAGCGCGAGAATGTGA
Protein Sequence: MLEKNTDNMSDKENERIPDNEEIIIEEPLDNILNKPNENFKCAVMDEKIEQEFLDNACSKEIKDNDEGMVGLGDFVYIPVEHIEDRADIDDKMDQENLDNVSNKGSMDFRCSDVEEKMGQENFVYIPNEQMENIRSSDIDDKTLKEISDNLAIEKMENMKSIQVVLERIKYYDCDLCRCVFLNRSQLTLHSAKHVKPKLESNVDPDRFVKRFKCSECGLKFVQISTLEEHAVLHQPYPHVCRCGIGYYRKQDLAAHKNLLHANEIRKEIAHLTTREQRAIENEMWVPHTTYKGRKVKRDVEFQLGDVKEEIIEETVGPRPRLKAELVVKSKSKPKARSPNTNATLKFVKNKDNTYTCPICLKKYNSLSSVQIHQVVHTKEKRFKCDICESRFTQQGALNLHLKRHTGIKEYACPHCGKEFFGKSNMYNHIRTHTGERPYNCAFCAKTFGDQSARQRHERIHTGVKPYTCKYCGKGFGDAGAYGRHVRIHENDRRHKCEMCNKKFYVKDDLRKHMNSVHSYAKNFVCKYCPKSFALKVYLDAHMRIHKKDRKYYECDHCGLRSYAKCHLERHILNVHFTRRDHVCPDCGRAFFNKITLKNHRTAVHGRSKEFECDHCGDKFSLKSGVQKHIMAHHLGLQCEACKKPLADNRTFQEHKIKGCIQCDMCGKYFLAQALYRREVSREVGSARM*

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -