Cpun024016.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062105.1:4553449-4557170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.041 3.2 9.0 0.3 2 23 18 40 17 40 0.95 2 19 0.0039 0.3 12.3 1.2 1 23 62 84 62 84 0.97 3 19 5.4e-05 0.0042 18.1 0.0 3 23 90 110 89 110 0.97 4 19 6.1e-05 0.0048 17.9 0.5 1 23 118 141 118 141 0.98 5 19 0.0065 0.5 11.5 0.9 1 23 147 170 147 170 0.96 6 19 0.018 1.4 10.1 1.5 1 23 176 199 176 199 0.97 7 19 0.0004 0.031 15.4 0.1 1 23 205 227 205 227 0.97 8 19 3.4e-06 0.00026 21.9 0.7 1 23 233 255 233 255 0.99 9 19 0.078 6.1 8.1 3.0 1 17 261 277 261 278 0.93 10 19 0.19 15 6.9 0.1 1 23 320 342 320 342 0.89 11 19 0.064 5 8.4 0.2 2 23 366 388 365 388 0.96 12 19 0.036 2.8 9.2 1.7 1 23 410 432 410 432 0.97 13 19 0.0024 0.19 12.9 0.1 3 23 438 458 437 458 0.96 14 19 0.0012 0.091 13.9 1.5 1 23 466 489 466 489 0.97 15 19 0.00016 0.013 16.6 0.5 1 23 495 518 495 518 0.96 16 19 0.037 2.9 9.2 2.5 1 23 524 547 524 547 0.97 17 19 0.00016 0.012 16.6 0.3 1 23 553 575 553 575 0.98 18 19 3.6e-06 0.00028 21.8 0.6 1 23 581 603 581 603 0.99 19 19 0.00029 0.023 15.8 6.2 1 23 609 631 609 632 0.95
Sequence Information
- Coding Sequence
- ATGCGATTCGCACGCACAATCAGCAACATCAAAATAGACGTGGCCGATTTGAAATGCACGATTTGCAATCTAAACATGCGCGACTTGGATACGTTGAAAGACCATCTGATTATCAAGCATAGGAAACCAATTAATCTAGAACTCGAAAACGGAGTCATTCCGTACATATCTGATGGTAAAGCATTCATTTGCACGCATTGCGGTGAAAAATTCGACCTTTTCACGAATATAAACATTCACATTAACCAGCATTATCCCAATAACATATGCCCTGAATGCGGCAAAGGGTTCTCTGCCTCAGACAGGCTGAAAGCACATCTGATTATGCACAAATCGGAGCGCAACTCTGAATACAAGTGCACGAAATGCGGTCAAGTGTTTCCGACGAGCGCTTTGAAGAGTAGCCACATGACTACCGCGCATAAGCCGAAGCATCGCTACAGGTGTCCGTACTGTGAGGAGCTATTCAAAGAATACAGGGATAGGACGAGGCATTTGAAAGAGGCGCACGGCAGGAAAGTTGAGTATCCTTGCAATTTGTGCTCGTCTGTGTTCCCGACTTGCAATCAACGGACACAGCATATACGGCAAGTGCATATACGTATAAAGAAGTTCAGTTGTACTGTGTGCCCGTCGCAGTTCGTGACGAGGGCCGAGCTGGCGAATCACATGGTGAAACATGGGGGTGAGAGGAATTTCCAATGCGAGGTGTGCAAGAAAGCCTACCCGCGGATGAAGTCCCTGAAGGAGCATATGCGTATACACAACAATGATAAGAGATTCGTATGCAAGTATTGTAATCATGCGTTTGTTCAGAAGTGCAGTCTCAAAAGCTCCGCTGACGTCAAAATATTATGGACACGGAAGCGCCAGTACAAGTTTAACGATCACAGAGACAATGCTGCTATAATACTTGAGTACTCCAACGCTTGCCCGTTTCGGTGGAAGCGCGGCTCGTTTACGTGTGCATATTGTCCATTATCGTTCGGTGACATAAACGCTGTAAAGGAACATTCGCTTGAACACCCCAATAGGACGGAAGCTATGCGATTCGCACGCCCCTTCGGCAGCATCAAAATTGACGTGGCCGATCTAAGATGCATGATTTGCAATCTAAGCATGCGCAACGTGGACACTCTGAAAGACCACCTCATCACCATGCATAGGAAACCAATCAACAAAGAGTTCGACATCGGCGTCATTCCGTTCCTATCCGACGGTAAAGCCTTCATTTGCACGCATTGCAGCGAAAGATTCGAGCTTTTCACGAACATCAACATCCATATAAACCAGCATTATCCCAATAACATATGCTTTGAATGCGGCAAAGCGTTCTCAGCAACGAACCGGCTTAAAGCGCATCTGATTATACACAGATCAGAGCGCAACGCCGAACATAAGTGCACGAAATGCGAGCAGGTGTTTCCGACGCGTGCTTTAAAGAATAACCACATTTCCACGGTACATAAGCCGGAGCATCGGTACAGGTGTCCGTATTGTGAGAAGGTGTTCAAAGCGTATGGAGAAAGGACGAGGCATTTGAAAGAGGCGCACGGCAGGAAAGTGGAGTATCCTTGCCATTTGTGCCCATCCGTTTTTGCTATGTGCAACCAACGAACGAAGCACATACGGCAAGTGCATATACGTATAAAGAAGTTCACTTGTACTTTGTGTCCGTCACAGTTCGTGACAGCAGGCCAGCTAACTAACCACATGGTGAAACATGGGGGTGAGAGGATTTTCCAATGCGAGGTCTGCAAGAAAGCCTATCCGCGGATGAAGTCTCTGAGGGAACATATGCGAATACATAACAATGACAAAAGATTCGTTTGCGAGTACTGTAATCATGCTTTTGTGCAGAAGTGCAGTCTCAAAAGTCATTTGAGAGCTCACCATCCTAATGCCGAGTTTTTGGACGATGTCGATAAGAAATGA
- Protein Sequence
- MRFARTISNIKIDVADLKCTICNLNMRDLDTLKDHLIIKHRKPINLELENGVIPYISDGKAFICTHCGEKFDLFTNINIHINQHYPNNICPECGKGFSASDRLKAHLIMHKSERNSEYKCTKCGQVFPTSALKSSHMTTAHKPKHRYRCPYCEELFKEYRDRTRHLKEAHGRKVEYPCNLCSSVFPTCNQRTQHIRQVHIRIKKFSCTVCPSQFVTRAELANHMVKHGGERNFQCEVCKKAYPRMKSLKEHMRIHNNDKRFVCKYCNHAFVQKCSLKSSADVKILWTRKRQYKFNDHRDNAAIILEYSNACPFRWKRGSFTCAYCPLSFGDINAVKEHSLEHPNRTEAMRFARPFGSIKIDVADLRCMICNLSMRNVDTLKDHLITMHRKPINKEFDIGVIPFLSDGKAFICTHCSERFELFTNINIHINQHYPNNICFECGKAFSATNRLKAHLIIHRSERNAEHKCTKCEQVFPTRALKNNHISTVHKPEHRYRCPYCEKVFKAYGERTRHLKEAHGRKVEYPCHLCPSVFAMCNQRTKHIRQVHIRIKKFTCTLCPSQFVTAGQLTNHMVKHGGERIFQCEVCKKAYPRMKSLREHMRIHNNDKRFVCEYCNHAFVQKCSLKSHLRAHHPNAEFLDDVDKK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -