Cpun015716.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062092.1:17010711-17025135[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 0.0041 0.32 12.2 1.1 1 23 299 321 299 321 0.98 2 19 6.9e-05 0.0054 17.8 2.3 2 23 329 350 328 350 0.93 3 19 0.11 8.5 7.7 1.4 1 23 354 376 354 376 0.97 4 19 0.00059 0.046 14.8 0.9 1 23 381 404 381 404 0.98 5 19 0.00088 0.068 14.3 0.1 1 23 408 431 408 431 0.95 6 19 0.0027 0.21 12.7 0.1 2 23 442 464 441 464 0.94 7 19 0.00088 0.068 14.3 0.1 1 23 474 497 474 497 0.95 8 19 0.00088 0.068 14.3 0.1 1 23 507 530 507 530 0.95 9 19 0.00088 0.068 14.3 0.1 1 23 540 563 540 563 0.95 10 19 0.00088 0.068 14.3 0.1 1 23 573 596 573 596 0.95 11 19 0.00088 0.068 14.3 0.1 1 23 606 629 606 629 0.95 12 19 0.0027 0.21 12.7 0.1 2 23 640 662 639 662 0.94 13 19 0.038 3 9.1 0.1 3 21 680 698 679 703 0.91 14 19 0.00095 0.074 14.2 0.7 3 23 713 734 713 734 0.98 15 19 0.099 7.7 7.8 0.6 2 23 754 776 754 776 0.96 16 19 1.4e-05 0.0011 19.9 0.5 1 23 787 809 787 809 0.98 17 19 1.1e-05 0.00085 20.3 1.4 1 23 815 837 815 837 0.99 18 19 0.015 1.2 10.4 2.7 1 23 843 865 843 865 0.98 19 19 7e-05 0.0055 17.7 0.2 1 23 871 894 871 894 0.98
Sequence Information
- Coding Sequence
- ATGGATCAGGTGAGAGCGTGCAGGATATGTCTCATTACGGACGTGAAAATGAACGATTTGCGGTCATATCCTCTGGTCAACTACTTCGAATCAATCGCCGGCACGAGTCCACCACTTAAAATGGACCTTCCACCATATGCATGCTATGAATGTGCTGCTCACATCAAGAACACCTTTTTGTTCCGGGAGAGGTGTCTCCGTGGGCAAAATACTCTCTACAACATTATGAGACTGACAGGACATattGATGAAACAAACATTAACAGTGTAGATAGAGTGCATTTGAATTTATGTTCCACTATTAAATACATGGTCTGTGAAAGTGCCATAGACATCACTTATGAGGAACCAGGCACATGTGAGATAAAAGATGAGCCTTGCAACGAAGGTGACATGCAAGAAGAGAAAGTGGATTttgatgatgacttttttaaAGCAGAAGAAATAGAATTTAGTGGGGTCGGTTCACCAGCACCCTActctagtgatgatgatgatgaacctctCTCGGTTCATAAGAGCAATAAAACTAAAGTTAAAAAGAAGGTTGAGAAGAAAAAAGGGAGGAAGAGTAAGCAGATAGAAGTTGAAATCAATTTAGATAAACCTGTGGTGGAAAATGTTGATACTGTCGAGCCAGAAGCGAGTGAAGTAAAAGACCAATCTGAGAGCGCAGCCCCGCCTAGGAAACGAGGCCGCCCACGGAAGAGTGAGGTCGCCAGTACTACGAAGAAGGAGCGAGCGACCGCTTCGCGCCGGACGAGAAATACAGGGGGTGTCGACGACAACGACATCGATTTGGAGGAATACGTCACTATTATTAAGCTTACGAAAGAAGAGCAGCTAGCAGAGATCACGAACCGGCAGCAGTCGTCCAACTACCTAAACGCGCCGTACAAGTGCAGCCTCTGCTTCAAGGGGTTCATAGACACCGACGCCTGGGAGCACCACGTGAGCAAGCATCGCCCGACTCCAGGTGACCTGGAGTGCCCCATCTGCAAGTTCCGCTTCAAGACCAAGCGCAATCTGCAGAAGCACAGCTCGAATCATGAGAAGAAATACGCCTGCAAGTCCTGTTCCTATGTGTCTAAGACAACCACCCAAGCGAAACAACATCAAAGATGGCATAAGGGCGTCACATACAAATGCCAGTACTGTGATGAGGTGTCTACCAAATGGACGTCGTACCTGAGCCACGTCCGCATCAAGCACCCGTCGGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTGATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTCATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGTGAGTCACCATGAGTTGATCTGCGGCGTGTGCGGCTACTCGTTCGTGAGCCAGCTGGGCCTCAACATGCACCGGACCATGATGCACAAGCAGCTCGTGGAGAAGGAGGAAGGCGCGAAAGAGGAGGAGGGTCCGTACTGCGCGGTGTGCGACGTCAAGTTCGTGAGCATGGAGGCGTACCGGCGGCACATGGTCACCTCCGTCAAGCACACGCAGAATACAGACTTTAAGAACGGCTGTCGTGTCTGCGGCGAGACGTTCGCGAACGGCGAGGAGCTCCGCGTGCACCACCGGCGGCTGCACGCGCGGCAGCGGCCCAAGAACTACGGCAAGAAGCCCGCCAACACCACGTGGCCGGCCAGCTGCGACCACTGTGAGGAGACGATAGCGAACGCTCGCGACTACTGGACGCACTTCCGACGCGCGCATCCCGACAAGCCCTACCCCATACAGAAGAACTACATCTGCGACATATGCGGGAAGAGCTTCCGGGGTAACGCGTTCCTGGTATACCACAAGCGGACGCACACGGAGGAGCGCGCGTACAAGTGCGGACAGTGCCCCAAGGCGTTCTTCAACAGAACCAACCTGCAGATGCACGAGAAGACGCACTCCGACCACCGGCCCTACCCCTGCACCGTCTGCTTTAAAGCTTTCAAGTGCAAGGGGGCGCTCGACAGGCACTTCAGGAGCCACACGGGCGTGAAGCCGTACGAGTGCGAGGTGTGCGGCAAGGCGTTCGGGCAGTCCAACAGCCGCAAGCTGCACGTGCGCACCGTGCACCTCAAACAGCCCGCGCCCTACGTCAGCCGCGCACGCCTCGAGCGGCGCCGCGCACGCCTCGAGCGGCGGCAGCCGCGTGTAGCGGCCAAGGACCCGCCGCACTACGCCTTCTGA
- Protein Sequence
- MDQVRACRICLITDVKMNDLRSYPLVNYFESIAGTSPPLKMDLPPYACYECAAHIKNTFLFRERCLRGQNTLYNIMRLTGHIDETNINSVDRVHLNLCSTIKYMVCESAIDITYEEPGTCEIKDEPCNEGDMQEEKVDFDDDFFKAEEIEFSGVGSPAPYSSDDDDEPLSVHKSNKTKVKKKVEKKKGRKSKQIEVEINLDKPVVENVDTVEPEASEVKDQSESAAPPRKRGRPRKSEVASTTKKERATASRRTRNTGGVDDNDIDLEEYVTIIKLTKEEQLAEITNRQQSSNYLNAPYKCSLCFKGFIDTDAWEHHVSKHRPTPGDLECPICKFRFKTKRNLQKHSSNHEKKYACKSCSYVSKTTTQAKQHQRWHKGVTYKCQYCDEVSTKWTSYLSHVRIKHPSEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHELICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHEFICGVCGYSFVSQLGLNMHRTMMHKQLVVSHHELICGVCGYSFVSQLGLNMHRTMMHKQLVEKEEGAKEEEGPYCAVCDVKFVSMEAYRRHMVTSVKHTQNTDFKNGCRVCGETFANGEELRVHHRRLHARQRPKNYGKKPANTTWPASCDHCEETIANARDYWTHFRRAHPDKPYPIQKNYICDICGKSFRGNAFLVYHKRTHTEERAYKCGQCPKAFFNRTNLQMHEKTHSDHRPYPCTVCFKAFKCKGALDRHFRSHTGVKPYECEVCGKAFGQSNSRKLHVRTVHLKQPAPYVSRARLERRRARLERRQPRVAAKDPPHYAF*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -