Cpun004661.2
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062080.1:18476738-18489564[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 19 6.5 5.1e+02 2.1 0.3 2 11 159 168 158 180 0.81 2 19 0.0011 0.087 13.9 0.4 1 22 185 206 185 209 0.92 3 19 0.0065 0.51 11.5 2.3 2 23 322 344 321 344 0.94 4 19 0.0027 0.21 12.7 0.0 1 23 350 372 350 372 0.96 5 19 0.026 2 9.7 0.2 1 23 382 405 382 405 0.88 6 19 2e-07 1.6e-05 25.7 3.5 1 23 410 432 410 432 0.98 7 19 1.1e-05 0.00087 20.2 0.9 1 23 438 460 438 460 0.96 8 19 6.9e-05 0.0053 17.8 5.1 1 23 466 488 466 488 0.98 9 19 3.1e-07 2.4e-05 25.2 0.6 1 23 494 516 494 516 0.98 10 19 0.0027 0.21 12.7 4.4 1 23 522 544 522 544 0.98 11 19 0.0028 0.22 12.7 0.0 1 22 550 571 550 571 0.94 12 19 1.4e-05 0.0011 19.9 0.6 1 23 578 600 578 600 0.98 13 19 1.4e-06 0.00011 23.1 3.5 1 23 606 628 606 628 0.98 14 19 2.8 2.2e+02 3.3 0.2 14 23 632 641 629 641 0.84 15 19 1.4e-06 0.00011 23.1 3.5 1 23 647 669 647 669 0.98 16 19 2.8 2.2e+02 3.3 0.2 14 23 673 682 670 682 0.84 17 19 6.3e-06 0.00049 21.0 2.0 1 21 688 708 688 708 0.96 18 19 6.1 4.7e+02 2.2 1.7 12 23 708 719 707 719 0.85 19 19 2.9e-06 0.00022 22.1 1.8 1 21 725 745 725 746 0.96
Sequence Information
- Coding Sequence
- atGGAAAGATGGCTCCGAAACCAGCTTACCATTTGCCTTCCAACAGTCACCAGCGATGGGTTGTACCAAGTGGATCACCCGGTGGCGTTGGCGGCCGCGGGGTTGGACAAGCCGAAGCGCAAGCGCGGCCGGCCGCCGAAGAAGAAGCCGCAGAGCGAGCCGCTGAGTCAggccgcggccgcgcgcgcCTCGCCGCGGCCCGAGCCGGCCGACGAGCCCAGCGGGAAGAGGCGCAGGAAGACGCCCACCAGGTTCAGGGGAGCTGTCCAGGGCAAGGAGCTGGAGCGTATGCTGCTGGAGGAGGGCGTGACGGACGGGGACAGCGACCGCGACAGCGCGgccgagccgccgccgccgcggacGCCGCGCGAGCCCGAGGTCATCGGCCACCTGCAGCACTCGGGCGAGCTGGTCGTCGTCGTCAAGGGCAAGGGCCGCGGGAGACCCAAAGGGCGCATGCGGCAGACGCGTCAGGTGTGCGCCATCTGCGGCACGGAGTTCTCGTGCGTGGGCCGCTACATGTCGCACGTGGCGGCGCACGGCCCGGTGCGCTACCGCTGCGCGCAGTGCGGCGAGACCTTCGCCACGCGCCTGCGCTTCACTGCGCACCAGCGAGACGCGCAGCACACAGGGCAAGTCGTCGTGCCGGCGACTGCCAGCGACAATGAGACTAAGAAGGATGTCGCAAACGAGGAGCCGGTGCAGGAGCAGGACCCGCTCGAGCTGGCGCCGGTGGCGTCGGTGGTGAGCAACGCCTGCCGCGCGCTGCCCGAGCTCAGCGACCCGCTGGACGCGCCGGGAGACGCCCACGCcgccccgcccgccgccgccgcagacCCCGCCCCCGACGCCCAGGACGGCGCGGTGTTCGCAGAGACCCTCGATAAGAAAGAAGTAGTTATTATTGAACCTGAAAAGACTGAAGAAGATGACGATAAAACAAAGAAAGGGAAACAAAAGCTCAAATGTAACCACTGTGACAAGCTGTTCAGTAGCAAGCAAAGCAAATCACTGCATATTAAGGCGGCGCACGGCGGCGAGCGGCCGTACGCGTGCGGCGAGTGCGGAGCGGCCTTCGCGTACCCGCGCTCACTGTCGCTACACGCGCTGTCGCACCGCCGCCAGCGCGCGCAGCCCAAGGGCTTCGCCTGCGACCTCTGCGGGAAGGTGCTGAACCACCCGTCGTCCGTGGTGTACCACAAGGAAGCGGAGCACGCGGGCCAGCGATACGTGTGCAACAAGTGCGGCAAGTCGTTCAAGCAcaagcagctgctgcagcgGCACCAGCTGGTGCACTCGCAACATCGCCCCTTCGACTGCAAGACATGCAACGCGTCGTTCAAGACCAAGGCGAACCTGATCAACCACCAGCTGCTGCACACGGGCGTCAAGAAGTTCACCTGCGAGATATGCAAGCACAAGTTCGCGCACAAGACGAGTCTCACGCTGCACATGAGGTGGCATACGGGCCACAAACCGTTCTCGTGCGGCAAGTGCGGCAAGAGCTTCAGCCAGAAGGGCAACCTGTCTGAGCACGAGCGCATCCACACGGGCGAGAAGCCGTACGAGTGCACGCTCTGCAACCGACGCTTCACCACCTCCTCGCAGCACCGCCTGCACGCGCGCCGCCACAACGCCGAGCGGCCCTACGCCTGCGCCTCCTGCGGCAAGCGGTTCGCGTCCCGCGGCTCGTGGGCGGCGCACGTGCGTCGCGAGGCGGGTACTCGCACGCACCGCTGCTCCGTGTGTCCGCGCGCCTTCGCCGAGCGCTGGGCGCTGCTGAAGCACATGCGGCGGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGTGGCACTGCCAGTGCTGGGCGCTGCTGAAGCACATGCGGCGGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGTGGCACTGCCAGTGCTGGGCGCTGCTGAAGCACATGCGGCGGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGTGCTGGGCGCTGCTGAAGCACATGCGGCGGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGGTGAGCGACCCACTAGCTGTAGTGGCACTGCCAGTGCTGGGCGCTGCTGAAGCACATGCGGCGGCACACGGGCGAGCGGCCCTTCCGCTGCCCGCACTGCCCGCGCGCCTTCGCCGACTGCTCCAACCTCAACAAGCACAAGCGGGTGAGCGACCCACTAGCTGTAGTGGCACTGCCAGTGCTGGGCGCTGCTGA
- Protein Sequence
- MERWLRNQLTICLPTVTSDGLYQVDHPVALAAAGLDKPKRKRGRPPKKKPQSEPLSQAAAARASPRPEPADEPSGKRRRKTPTRFRGAVQGKELERMLLEEGVTDGDSDRDSAAEPPPPRTPREPEVIGHLQHSGELVVVVKGKGRGRPKGRMRQTRQVCAICGTEFSCVGRYMSHVAAHGPVRYRCAQCGETFATRLRFTAHQRDAQHTGQVVVPATASDNETKKDVANEEPVQEQDPLELAPVASVVSNACRALPELSDPLDAPGDAHAAPPAAAADPAPDAQDGAVFAETLDKKEVVIIEPEKTEEDDDKTKKGKQKLKCNHCDKLFSSKQSKSLHIKAAHGGERPYACGECGAAFAYPRSLSLHALSHRRQRAQPKGFACDLCGKVLNHPSSVVYHKEAEHAGQRYVCNKCGKSFKHKQLLQRHQLVHSQHRPFDCKTCNASFKTKANLINHQLLHTGVKKFTCEICKHKFAHKTSLTLHMRWHTGHKPFSCGKCGKSFSQKGNLSEHERIHTGEKPYECTLCNRRFTTSSQHRLHARRHNAERPYACASCGKRFASRGSWAAHVRREAGTRTHRCSVCPRAFAERWALLKHMRRHTGERPFRCPHCPRAFADCSNLNKHKRWHCQCWALLKHMRRHTGERPFRCPHCPRAFADCSNLNKHKRWHCQCWALLKHMRRHTGERPFRCPHCPRAFADCSNLNKHKRCWALLKHMRRHTGERPFRCPHCPRAFADCSNLNKHKRVSDPLAVVALPVLGAAEAHAAAHGRAALPLPALPARLRRLLQPQQAQAGERPTSCSGTASAGRC*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -