Cpun012594.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- UPF1
- Assembly
- GCA_031163375.1
- Location
- CM062089.1:5148262-5161308[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.013 13 6.3 0.0 3 25 1048 1070 1046 1076 0.91 2 3 0.013 13 6.3 0.0 3 25 1086 1108 1084 1114 0.91 3 3 0.013 13 6.3 0.0 3 25 1124 1146 1122 1152 0.91
Sequence Information
- Coding Sequence
- ATGGCAAAGTGGAAGTTGTGTCGTCAAACATTTGGTACCGAAACGTTTACATTATCGGAAGGAGATGAAGTTACATTGGGCAGAGGactaaataatacaataactCTGTCTAGCTTGGTTATATCTAGAGCTCACTGTACTATAAATGTCCTAAAAGACCAGCTACTTATCACAGATTTAAACAGTTCAAATGGCGTATATATAGGTAACAAAAGAATTCCAACAAATATtccttatgaaataaaaaatttggATATTATTGGTATTGGATGGACATCTGGCGTTCCACTTGGTAAAATTCAAGATAATGAAAAATACATCTTCAAAGTAGTTAAGGAAGACCAACCAATACCATCAATAAATAGGCTAACTTTTCAAAGTGATGATGAGTTTGAAAATATTGAACAAAGAATTGCCAAACTAGACAGcagtaatttagaaaatgaagcacctgttttaattaataagccTATGCTTAAGAGAAAACAGAACACTGAAACTAATTCTATGTTGCccgaaaaagttattaaaaaagaaattaaaaatatgggTAATGATCAGGTCATCAATATACTATCGGACAGTGACACAGaagtaaatattaaatcaaTAGAAAATATAAGACCTAAGCTGGAATCAGTACCAGAAGAGCCTCAAAAAGCTAATTGCAATAACAAAAAcgaatttaaattgaaaacagAAAATGAATACTTAGAATTTGAGGCTTTTAATGTGAAACAAGAATATACCGGGTATGATGATGAACCCATACGCATTGATAGTGATAGCGACAGTGAATCTGAGCACTGGTATTTAAGATTATCCCAGAGTTCGCCTGGAAAGCCGTTTACTATGTTAAGAGAAAATAATATTGATACACGCCCAGAAGACAGTTCCTATAGTCAGATGGATGATGATTTAGGCTGTAGTGCTTTTGTGGGAGATGAAAATGATTACTTAGATGACCCTGTATCTATACCACCACAACCTCCCGAGCCCGAAGATGATCTTCCGGCAATAGATCttaatatgcaaaaaaaatgcGAACCTGTTCAAAAAATAGCTGATAGTATTATGCCAAGtgaaaacaatttaattgaattaaaaaatgcTGAGGTTACAAGCCCAACAAAGAAAATGGGAAAAGATGAAGTTGATGGCTTCAGTTCTACAGCACACATAATATCTACAACAGTAACTGAAATTGAAACAGCTATTGCAAAAAAAACTCAAATGATAGAGCCTCTTAAAAAACTACCACAGAGAAGAACTAATCAGATTACTCCCGAAAGAAAAACTAAAACTTTATCAACTAAGCATGATAAAAAGTCAAAGTATAGTTCTAAAAAGCACAATGTTTCTATAAGTAATTCTCAAAAGGAAGAACGGAAACGTAAATTAAGAGAAATTGCTCAAAAAGAGAAAGGAGAATTTACTAAAATTGTAACAGAAGAATCTGATAAATTACCTATCACATCTTCTAAAGATGAAGACCTACATTCCTCAAAAAGTCATTGTAGTAATAAATCAGTTTCTAATGTTAAAATCACATCATCAAGTAGACAAGCATTTTTAACAAAGGATGTCAAACCAagtaagaaaaaagaaagtgCACATAAATCATCTAAAGGAAAAAAAGAATCATCATCTCCAAAAGAACAGCAAAAAGTAACATCACCCAAACAATctgataatattgaaaataaaaagaagctatctaataaaaaagatcaagctgatgacaaaaaaaatattaccaaaaataataataacaaatgtacTTCAAATGATTCCAATTcttcaaaaaataatagtatCAATGAGCCGAGGGAACCATTAAAAAGCCTAAGAGCTTTGATAGCTAGTGAGAATACTAAGGTGCACTCTCAACTgcagaagaaaaagaaaaaagttcaTTTTTCTGAAGAAAAGCCAGAGATTCACTATTTTGAAATTCAGGatggaaataaaatgaaaaagacAAGTTTAGTAAGAACATCATTAGTCGACAGTAGGCAAATGCCTATATTTTCATTGGAAAAGATTACCTTAATGAAAATTTTGCGCTGGAATCCACATTGGTTAGAggaacaaataaacaataatgaaCCACCACCAATTTTGGGACATAGTAATCCACCTTTGGCCATATTTCATTCTTTCACTAACCACAATCAATATGTTCAGTTAATTGGAGATTTACTTCTAATGGAAATTTGGGAGTGTTTATCGATAGCATATACAAAAATTCGTAACCAATGCACTGGATTGAGAATGGTAATAGCCTCATTACCTCCTGTGCCCACGCAAGAACGCCACTTTGATATTTTCAACCTTAGTGTGGATGTGTCAATACCTACTTCTGAAGCAAAAACTCTACCCAGGGTCGGTGAAATATTACTTGTTACGTTTGGACCTGAAAATGCCAAATACCAAAGATTTTTCTTTGTACATAATGTTAGATGTCTTCCCTCTCCACCAACTAACCGAAACTCATTTTATAATATATCACTTCATGCCACATTCAGCGACAAGATGAAAAAACTGAGGCCGGGCGAAGTGATGATAGGAATAAGCTTAGCATACATAAATAAGGAATTGTCGCTGTTCGAAGCGATGGCGTACATGGCCGGCTCGCCGCTCAGCGAAGCTATCCTGAGGCCGGAGCCTCGGCACTTTATGAGACAGGAACCTAATCCGGCCATTAGCATGACTTCTCAGTGGACAATGACTCTAAATCCGAGTCAGCAAGTGGCTGTGGCCTCGTCAGTGTCCGCAGCTCTTGGCGATCAGCCTTGCATACAAATGGTGCAGGGACCTCCGGGCACTGGTAAATCCAGTGTCATATGTGCTATAGTTATGTCGTATTTTTACGATTCGAGCGGTAAGAAAATGCAGAACCGCGGCAAAATACTTATATGCGCGACGAGCAATGCCGCTGTGGATGAACTAGTCATTAGGTTACTTGGCATCAGGCAAAACTTGCCCACCGCGGAGCGGTTCCGCATGGTGCGCGTGGGGCGCGCGGAGGCGATGCACCCGCGCGCGCGTGACGTCAGCTCGCAGCAGCTGGCGCAGCGCGACGCCGCGCGCCTGCAGGACCCGCCGCACCGCGCCGGACTCAACGAGGAGGTTAGTGGTGACCAACTAGCGGAGGCGATGCACGACGTCAGCTCGCAGCAGCTGGCGCAGCGCGACGCCGCGCGCCTGCAGGACCCGCCGCACCGCGCCGGACTCAACGAGGAGGTTAGTGGTGACCAACTAGCGGAGGCGATGCACGACGTCAGCTCGCAGCAGCTGGCGCAGCGCGACGCCGCGCGCCTGCAGGACCCGCCGCACCGCGCCGGACTCAACGAGGAGGTTAGTGGTGACCAACTAGCGGAGGCGATGCACGACGTCAGCTCGCAGCAGCTGGCGCAGCGCGACGCCGCGCGCCTGCAGGACCCGCCGCACCGCGCCGGACTCAACGAGGAGATCGCGCACATAGAAGCTAAAATCAATATGTGGAAGACGCAAGCACAGGACGCGGCGGCGAAGGGTCAGGACCCCATGCGCGTGGCGTACTGCCAGGGGCGCATCAACGATCTAGTCAAACGGAAAGGACTGTTTCGAAACGGCAACGGAGGGGGCGGTGAGGGCGGCGACCTGCGGCCAGACCAGCTGCTGGCGGCCGAGCGGCGTATAATCGAGGGCGCAGACATAGTGGTCACCACGCTAGCCAGCGCACACAACCACAAGATGAGAggGCTGAAGCGGCGCATCGCGCTGTGCATAGTGGACGAGGCGGGGCAGGCCATCGAGCCGGAGTCGCTGATCCCGCTCACGCTGGACGTGACCAAGCTCACGCTCATCGGCGACCCGCAGCAACTGCCCGGCTACATCTGCTCACAGAGGGCGAAGAAGCACGGTCTCGGCGAGAGTTTATTCTCCCGCCTGGCGGGCTGCGCGTCGGCGGCGGGCGAGTGCGGGCCGGTGCTGCTGCGCGAGCAGTACCGCATGCACGCGCACATCGCGGAGTACCCCAACCGCGCCTTCTACGGCGGCCGCGTGGCctcgcgcgcgccgcgccgcccgccgctgcCCGTGCCGCCCTACTGCCTGCTCGGCATCTCCTCCGGCGATAAGGGACAGAACGCGTCGGGCGCCAACGAGGTGGAGGCGTGGGGCGTGGCGCGGCTGGCGggcgcgctggcggcggcgctgcgcggGACCGGCCTGAGCCTCGCCGTCATCACGCCCTACAACGCGCACAAGGATCTCATCAAGAAGAATCTCAAGATTTTAATGGACCCAACGGAGGGTCCGGTGGAGGTGAACACGGTGGACAGCTTCCAGGGCCAGGAGCGAGACGTGGTGGTGGTGTCGCTGGCGCGCAGCCAGGGCGTGGGCTTCCTGACGGACGCGGGCCGCATGAACGTCATGCTCACGCGCGCGCGCCACGCGCTGCTCGTCTGCCTCAACCCGCACGCCGTGCTGaaaAATCACCAGTGGCGAACGTTACTTGAAGATGCACAAAGGAGACAACTATATAGAACGCTTCCATACAAAATGTGCCAAGCGACTGGACAAATATCTAATGATGAAATTATTAAACAAGTGATGAAGTGa
- Protein Sequence
- MAKWKLCRQTFGTETFTLSEGDEVTLGRGLNNTITLSSLVISRAHCTINVLKDQLLITDLNSSNGVYIGNKRIPTNIPYEIKNLDIIGIGWTSGVPLGKIQDNEKYIFKVVKEDQPIPSINRLTFQSDDEFENIEQRIAKLDSSNLENEAPVLINKPMLKRKQNTETNSMLPEKVIKKEIKNMGNDQVINILSDSDTEVNIKSIENIRPKLESVPEEPQKANCNNKNEFKLKTENEYLEFEAFNVKQEYTGYDDEPIRIDSDSDSESEHWYLRLSQSSPGKPFTMLRENNIDTRPEDSSYSQMDDDLGCSAFVGDENDYLDDPVSIPPQPPEPEDDLPAIDLNMQKKCEPVQKIADSIMPSENNLIELKNAEVTSPTKKMGKDEVDGFSSTAHIISTTVTEIETAIAKKTQMIEPLKKLPQRRTNQITPERKTKTLSTKHDKKSKYSSKKHNVSISNSQKEERKRKLREIAQKEKGEFTKIVTEESDKLPITSSKDEDLHSSKSHCSNKSVSNVKITSSSRQAFLTKDVKPSKKKESAHKSSKGKKESSSPKEQQKVTSPKQSDNIENKKKLSNKKDQADDKKNITKNNNNKCTSNDSNSSKNNSINEPREPLKSLRALIASENTKVHSQLQKKKKKVHFSEEKPEIHYFEIQDGNKMKKTSLVRTSLVDSRQMPIFSLEKITLMKILRWNPHWLEEQINNNEPPPILGHSNPPLAIFHSFTNHNQYVQLIGDLLLMEIWECLSIAYTKIRNQCTGLRMVIASLPPVPTQERHFDIFNLSVDVSIPTSEAKTLPRVGEILLVTFGPENAKYQRFFFVHNVRCLPSPPTNRNSFYNISLHATFSDKMKKLRPGEVMIGISLAYINKELSLFEAMAYMAGSPLSEAILRPEPRHFMRQEPNPAISMTSQWTMTLNPSQQVAVASSVSAALGDQPCIQMVQGPPGTGKSSVICAIVMSYFYDSSGKKMQNRGKILICATSNAAVDELVIRLLGIRQNLPTAERFRMVRVGRAEAMHPRARDVSSQQLAQRDAARLQDPPHRAGLNEEVSGDQLAEAMHDVSSQQLAQRDAARLQDPPHRAGLNEEVSGDQLAEAMHDVSSQQLAQRDAARLQDPPHRAGLNEEVSGDQLAEAMHDVSSQQLAQRDAARLQDPPHRAGLNEEIAHIEAKINMWKTQAQDAAAKGQDPMRVAYCQGRINDLVKRKGLFRNGNGGGGEGGDLRPDQLLAAERRIIEGADIVVTTLASAHNHKMRGLKRRIALCIVDEAGQAIEPESLIPLTLDVTKLTLIGDPQQLPGYICSQRAKKHGLGESLFSRLAGCASAAGECGPVLLREQYRMHAHIAEYPNRAFYGGRVASRAPRRPPLPVPPYCLLGISSGDKGQNASGANEVEAWGVARLAGALAAALRGTGLSLAVITPYNAHKDLIKKNLKILMDPTEGPVEVNTVDSFQGQERDVVVVSLARSQGVGFLTDAGRMNVMLTRARHALLVCLNPHAVLKNHQWRTLLEDAQRRQLYRTLPYKMCQATGQISNDEIIKQVMK*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -