Cpun024363.1
Basic Information
- Insect
- Conogethes punctiferalis
- Gene Symbol
- -
- Assembly
- GCA_031163375.1
- Location
- CM062106.1:680612-682816[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.8e-09 9.6e-06 25.9 0.0 2 38 17 54 16 59 0.88 2 2 6.6 6.5e+03 -2.4 0.0 19 32 342 355 330 355 0.71
Sequence Information
- Coding Sequence
- ATGCCGCGAATATACATTAAAAAGGGGACAAGGACGGGAGAAGTAGATGAAGGTGCAATGGAATCGGCGATAAAAGAAGTTTTGGATAAGACATTATCTATTAGAAAATCTGCAcaaaaatatggcgtcaaaccaACAACACTCGAAAGTCGTCTGAAAAAGTTTCACCAACAAGCAGCTGCCGAAAATATCCCTACCCGTGCGTTCACTTCCAAGTTTACGTCAAATCAAGTGTTTTCAACTGAGGAGGAAGCCCTtttaaacaattacattattgaATGCTCCAAAATGCACTACGGTCTGACGATCATCCAGGTCAGAAAATTGGCATATGAGTTTGCAAAAGCCAATCAGCTTAATTTTCATCCGAGTTGGCATCATAATAAAATGGCTGGTAAAGAATGGTTGGATAGTTTCCGCAGGCGAAACGGAAACCTGGGTCTTAGAAAGCCTGAAAATACCAGCGCCGCCAGATCATTTGCTTTTAACAGGACTGCTGTAACTGATTTCTATAATAACCTTGAAAAGGTTCTAACAAAGTACAAATTTACTGCAGatcgtatttttaattttgacgaGTCCGGAATTTCCACAGTGCTGAGCACACCTAAAGTTTTAGCTGAAAAGAATCAAAAACAAATAGGCCAACTTGTGTCAGCAGAGAGGGGAGAACTCGTTACATTTGGAGGAATAATTTCAGCAAGTGGTAATACAATTCCGCCACTATTTATCTTCCCAAGGGTTCACTTCAAGGACCACTTTATGACAGGTGCACCAGAAGGAAGCCTGGGAGTTGCAACAAAAAGTGGGTGGATTACTTCTGCTATATTTATAGAGGTACTGAAACACATCCAAAAGAAATCGTCGTGCTCTAAAGATAATCCCATTTTGTTGCTTGTCGACAACCATGAGAGCCATGTGACTATTGAAGCTGTAAATTCTACCCAAGATGCTCAAACGAACCCACAAGCTTCAACTTCTTCACTACCACAGGCGTTACAATCCACGCAAGATGAGCAATCAAGTTCTACAGCCGTTCAAGATTACGATGTGCCAGAGCATACAGCAGACCCCATACAGACAGAGCTTATTCAACAAAACCTTCCAAGTTGTTCATCATCTGTGTCTCCATCTTTGCTATCACCTACTACAGTAACAGATTGCTTACCAGCTGTGGGGCTGATCACCCCAGAGTTAGTCAGGCCATATCCTAGAGTGGACAGAGAttcaataaagaaaacaaagaaaGGAAAACTACCAGGCAAATCTAGAATTTACACTGATACTCCGGAAAAAGATAGACTGGAAGAAATAGAAAAAGGAAGACTATTGAAGAAGGAAGTGCAAGAGAAAAAACAAAAGGCTATGGCCATCAAAAAAGCTCTACATCTTGTCCTAGATGCAGATAACGCATCTTCAATAAAGAGGAAATCTCAATCGAAagattcatttaatttaaagaaGCAAAAGAAAACTACAAAGACTGATAGTGAAGATGACTATGAAGATGAGACTGATTGTGAAGATGAAGAGAGTTTAAGGGAAAGTTCTGCTTCTCCTGCGGAAGAAGTTGATGACGAAAATGAAACCCCAGTTTTAGCAGAAAACATAGAAGAAAAAAGCTTTGTGCTTGTTAAGTTCGAGAAAAAAAAGTCTGTGATTTATTATGTTGGACAAGTTATCCTGAAATATAGCTCCTCTGAATACAAAGTTTCTTTTTTGAGAAAGAAGCCTAATGCTTGGAGATTCGTTTTTCCCACAACGAAGGACGAAGGAACAGTTTACATATCAGATGTGGTATGTATATTGCCTCCGCCAAAGTCTGCTCTGACAGCAAGAACAGCTGACATATTTAGCTTTCCAAAAGATCTATCTTTATTTAATGTAGGGTAA
- Protein Sequence
- MPRIYIKKGTRTGEVDEGAMESAIKEVLDKTLSIRKSAQKYGVKPTTLESRLKKFHQQAAAENIPTRAFTSKFTSNQVFSTEEEALLNNYIIECSKMHYGLTIIQVRKLAYEFAKANQLNFHPSWHHNKMAGKEWLDSFRRRNGNLGLRKPENTSAARSFAFNRTAVTDFYNNLEKVLTKYKFTADRIFNFDESGISTVLSTPKVLAEKNQKQIGQLVSAERGELVTFGGIISASGNTIPPLFIFPRVHFKDHFMTGAPEGSLGVATKSGWITSAIFIEVLKHIQKKSSCSKDNPILLLVDNHESHVTIEAVNSTQDAQTNPQASTSSLPQALQSTQDEQSSSTAVQDYDVPEHTADPIQTELIQQNLPSCSSSVSPSLLSPTTVTDCLPAVGLITPELVRPYPRVDRDSIKKTKKGKLPGKSRIYTDTPEKDRLEEIEKGRLLKKEVQEKKQKAMAIKKALHLVLDADNASSIKRKSQSKDSFNLKKQKKTTKTDSEDDYEDETDCEDEESLRESSASPAEEVDDENETPVLAENIEEKSFVLVKFEKKKSVIYYVGQVILKYSSSEYKVSFLRKKPNAWRFVFPTTKDEGTVYISDVVCILPPPKSALTARTADIFSFPKDLSLFNVG*
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_01338661;
- 90% Identity
- -
- 80% Identity
- -