Cvac009755.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411333.1:18797309-18815170[+]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 9 2.8e-05 0.0023 18.9 3.2 1 23 309 332 309 332 0.97 2 9 0.48 38 5.6 0.8 2 23 340 361 339 361 0.95 3 9 0.28 22 6.3 4.6 3 23 394 414 393 414 0.93 4 9 0.00029 0.023 15.7 0.2 1 23 418 442 418 442 0.90 5 9 0.066 5.3 8.3 0.6 2 20 459 477 458 479 0.93 6 9 0.0018 0.14 13.2 2.1 2 23 516 538 515 538 0.91 7 9 9.3 7.5e+02 1.5 0.0 1 8 550 557 550 561 0.87 8 9 1.3e-05 0.0011 19.9 2.6 1 23 577 599 577 599 0.96 9 9 5.4e-05 0.0043 18.0 1.3 3 23 607 628 606 628 0.97
Sequence Information
- Coding Sequence
- ATGTCGGACCTCAAAGTTTGCCGCATATGTCTGTGCAAAGGCGTAAAAGTGTATAATTACGACAGTTTTCACTTAAAACAATATTATGAAGAAATTATGGCCAGAAAAGTAAATGAAAATGATGGCTTACCCAAATACTTCTGCTATGAGTGTGCAGCTGTATTGTACAAGTTTCATAAATTCAAAGAGAAATGCTGGATGGGAGAGAAGAGTCTCACGGAGTTGCTATGGAGTGGTTCTATCACCTTACCCTCAATTTCTCAAATCGACAGACAAGACAAAAATTTACAATCACCAATAGACATTGTAAGAGTCAGCAAAAGAGTTAAAACTTACATAATTAAAAGCAAAACACTATCAAAGAATATGGTTGAGGAAATACAAGTAGATGAAATACCAGAAATAGAAACCTATGTAATTGAATATGATAGTGAGAGCTCTTTGGATGATAAAAATGTAGCAGAAATAAAGAATGAAAATATGGAGTCAATTGAAGATGAAAAAACAAATATTGATATTGGCATAAGTAAAGAAGAAAAGGCAATACCAGTTATAGAAGAAGATAGAAAGTTTAGTGACGATGATGATTCAAATTCAAAAAATGTGAATGATTTTGACAAACCAGCTATCGAGGAAGAAATTAGTGATGAAATTCCTGTTGAAGAAGAGGTATTAAACTTCAACCGCGAACAAGCAAACAGTGACGCCGAAATAGTTCTTAATAAAAATCACAAAGAAAAAAAACCAAAAAAAAACAAAGCTGAAACAGATATTCCTAACAAAAAAGGTAAAAAATTTGAAGTTTCCAATACAAAAAAGAAATACTTAGATCCTAATCATTGGTTGAAGACCAATTTGACTGAAGAGGAAGCTTTCGAAGAGTTTAAAGCGAGAGCACAAGACCAGCAGTATGTGTCGGCGGCTCATAAATGTTCTGATTGTTATAAGGGGTTTTCTAAAGAAGACATGCTGAATAGACATATTAAATCAAGACATAGTGAGTCACTAGGCCCAGTGGAGTGTCGCTTCTGCAAAATGCGTTTTAAGTGGAAGGCGTATCTAACAGGTCATATAACGCAACACTACACTAGGTACAAATGCCTGAGGTGTGACCTCATATGCCCTCTGAAGAGTACAGCTGAATTTCACAATGATTATCATAACGGGGTAATGAGAAAGTGCATTCATTGCGGAGATGAATTCAGACACCTGTCAACATACTACACACACTTACGCACGCACCGCAGCGAGCACGTGTGTTCTATATGCGGCGCGTCATTCGTCAGTGCAGCAGGACTCAACATCCATAAAAAAAGAACCATGCATTTAGATACTGTTGTTAATCCTGAAGAAGGTGTGACAAATGCTGACACATACTGTGAGCGATGTGACATCAAGTTCGAGACGCAAAAGGCTTACCAAGAACATGTGTTTCATTCAGCCAAGCATACCGAAGGAGTTGGGGATTTGGTATGCGAGACCCCTGCCCCATCAATACCAATACAAGGACAAAAAGGTATCCGAAGAGACCGTCGGATAAGCACTCCTTGTACCATATGCAACAGACACTTCAAAAGTCTGACGGAATACATGAGACATCGCACTGAGGACCATAGGGATGTTCCTCTTCCGAAGGAAGACCGAAGATACATCTGTGAGATTTGTGGAGCCTCAATAGCGCTGGCCAGCGTACCAAGTCACCAGAACATTCACACTCGCGAGCAACTACACGCGTGCAACACTTGCGGACGAAAGTTTACCACCAAAGCAGGCATGACTAAACATCAACTGACGCACTCCAATGAGAAGCCGGTGGCTTGTACTCTATGTGACAAACGGTTCAAGGAATCCAGCAGCATGAAGCTACACTACCGCACCATCCATCTCAAAGAGCCGTATCCGAAGAGGAACAGAAAAAAGAAAAACGACGATCTATCAAAGGATGTTAACGGCCACGAGGACTCGGACGACAATATGACACTCGACAAGTATTTATAG
- Protein Sequence
- MSDLKVCRICLCKGVKVYNYDSFHLKQYYEEIMARKVNENDGLPKYFCYECAAVLYKFHKFKEKCWMGEKSLTELLWSGSITLPSISQIDRQDKNLQSPIDIVRVSKRVKTYIIKSKTLSKNMVEEIQVDEIPEIETYVIEYDSESSLDDKNVAEIKNENMESIEDEKTNIDIGISKEEKAIPVIEEDRKFSDDDDSNSKNVNDFDKPAIEEEISDEIPVEEEVLNFNREQANSDAEIVLNKNHKEKKPKKNKAETDIPNKKGKKFEVSNTKKKYLDPNHWLKTNLTEEEAFEEFKARAQDQQYVSAAHKCSDCYKGFSKEDMLNRHIKSRHSESLGPVECRFCKMRFKWKAYLTGHITQHYTRYKCLRCDLICPLKSTAEFHNDYHNGVMRKCIHCGDEFRHLSTYYTHLRTHRSEHVCSICGASFVSAAGLNIHKKRTMHLDTVVNPEEGVTNADTYCERCDIKFETQKAYQEHVFHSAKHTEGVGDLVCETPAPSIPIQGQKGIRRDRRISTPCTICNRHFKSLTEYMRHRTEDHRDVPLPKEDRRYICEICGASIALASVPSHQNIHTREQLHACNTCGRKFTTKAGMTKHQLTHSNEKPVACTLCDKRFKESSSMKLHYRTIHLKEPYPKRNRKKKNDDLSKDVNGHEDSDDNMTLDKYL
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -