Basic Information

Insect: Conistra vaccinii
Gene Symbol: -
Assembly: GCA_948150665.1
Location: OX411343.1:8277925-8298592[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 11 0.017 1.4 10.1 0.1 1 23 189 212 189 212 0.95

2 11 0.00041 0.033 15.2 2.0 1 23 219 241 219 241 0.99

3 11 0.26 21 6.4 0.3 1 23 245 268 245 268 0.96

4 11 0.00011 0.0086 17.0 1.1 1 23 279 301 279 301 0.97

5 11 0.0043 0.34 12.0 1.3 3 22 313 332 312 336 0.89

6 11 8.9e-05 0.0071 17.3 0.4 1 23 377 399 377 399 0.98

7 11 0.017 1.4 10.1 0.5 3 22 409 428 407 432 0.90

8 11 2.2e-05 0.0018 19.2 0.4 1 23 440 463 440 463 0.91

9 11 0.00023 0.018 16.0 3.4 1 23 469 492 469 492 0.96

10 11 3.3e-05 0.0027 18.6 0.9 3 23 501 522 499 522 0.92

11 11 0.02 1.6 9.9 3.2 1 23 528 551 528 551 0.96

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	11	0.017	1.4	10.1	0.1	1	23	189	212	189	212	0.95
2	11	0.00041	0.033	15.2	2.0	1	23	219	241	219	241	0.99
3	11	0.26	21	6.4	0.3	1	23	245	268	245	268	0.96
4	11	0.00011	0.0086	17.0	1.1	1	23	279	301	279	301	0.97
5	11	0.0043	0.34	12.0	1.3	3	22	313	332	312	336	0.89
6	11	8.9e-05	0.0071	17.3	0.4	1	23	377	399	377	399	0.98
7	11	0.017	1.4	10.1	0.5	3	22	409	428	407	432	0.90
8	11	2.2e-05	0.0018	19.2	0.4	1	23	440	463	440	463	0.91
9	11	0.00023	0.018	16.0	3.4	1	23	469	492	469	492	0.96
10	11	3.3e-05	0.0027	18.6	0.9	3	23	501	522	499	522	0.92
11	11	0.02	1.6	9.9	3.2	1	23	528	551	528	551	0.96

Sequence Information

Coding Sequence: ATGATACTTCTAGTTGAATATTGGAAGAAGCAGTCTTTTATGCAAATTATAAGCGAAATAAATATCTCAGAAAGAGATAGTTTACCTGTGTGGTTGTGTTGGGAATGTGACGCACAGATGAGCCGCTTCACAAAGTTCAAGCAACAAGTTAAAACCTCATACTATTTGTTTTATGATTATGTTAAACAGAACACAAACCTATCAAAACTACAACCAAAACCAAGACTGACAACACACAAACTACACAACTTTGAACTACAAAACAACACGGACCAACAACCATTCCAAATAATAACAACAGATAACAATGAACAACCGAACTCCCCGAACAACCAGCAAGAATACGACAATACATGTGACACGAACTCAGATGATGAAAAACTTATTAACATACAGCCTAAAGAAAAAAACCGTTTAAACAGAATAATTTTAGGAAAGATTAAAAAAAAGAAGAAACGAAAAAAGAAGAAAGTGGAGCTGTATAGAGAAGTAGAGTTGAGTAAAGAAGATTTGGTTGAGGAGAGAAGACTAGCAATGTTGAAAGAAGATTATGTTAATGCAATGTTCAGATGTGAAAGATGTATATTGTCTTTTCCTAATGCTGAAGATTTAAAAGACCATGTCTCTGTCAAACATGAATTGAACTCAAAAAACTTCAAATGCGATATATGCGAATGTTCTTTCGCCTCCGAAGTATCATACAATTATCATATAAACAAACACGCGCGGCGCTATGAGTGCGGCGCGTGCGCGGAGCGGTGCAGCAGTAAGAGAGCTGTCATCAAACATTACGAGATGGCACATTATCATGGTACAAAGCAGTCATCAGCGAAATTTTCGTGCGAGTTTTGCGACAAGAGTTTCAGATGGAAGGCGTCTCTACGGAAACACGTTGAATCTCACAGAATAGAGACCGGACAGAAACGGAAGCCATATTGTGAACCGTGCAGGTTATCGTTTACAAATACATCAAATCTTCAGAAACATGTGAAAACTAGCTCTAAACATCAAATTCAATTAAAAGTTAGGAAACTAACAGAATCTCTTCCCGAAGACTCTTCAAACCCCGAGAAACATCAACAGCGTATAGACCAGATCAAATGTTCCGTGAACAGCGCCAAAGAGAAGTTCCCGTGCCCACAATGCGATAAAAAGTTTCAGTGGCGCGGCAATCTACTGAGGCATCTTAATAGCCATGTCGCGAGAGCGAATGGCGAGTTAATATGTGAGCCGTGCAACAGAACATTTTCTTCCATAGCAACTTATAAGCAACATATGAAAATTAGTAGAAAACATGTTAGTGAGAATGATTTCAAGTATATGTGCAGTGACTGTGGCAAGCGCTTCGCTAACAAGACTAGACTCAAAGACCATGTGGATTGGGAGCATCTGAAGAACTACGTTCATACATGTCCTGTGTGTCAGAAGGTATTCAAAAGTCACACTTCGCTGTATCTGCATAAACAAGTAGTTCATAAGAAGGATAACGCGGAACATTTGTGTGACCATTGCGGGAAACCTTTTCCGAACCAAGCCAAGCTCCGCGGCCACATGCTGGCCCTGCACAGCGCGCAGGCCGCGTACAAGTGCAGCACGTGCGGCGCGCGCTTCAGCTGGCTGTCCTGTCTGTCGCGGCACAACAAGAAGCTGCATGGGCAACACGCAGACCAAATAAAAAAGCAACACGTAGCGCTGCGAACAATACAGTGA
Protein Sequence: MILLVEYWKKQSFMQIISEINISERDSLPVWLCWECDAQMSRFTKFKQQVKTSYYLFYDYVKQNTNLSKLQPKPRLTTHKLHNFELQNNTDQQPFQIITTDNNEQPNSPNNQQEYDNTCDTNSDDEKLINIQPKEKNRLNRIILGKIKKKKKRKKKKVELYREVELSKEDLVEERRLAMLKEDYVNAMFRCERCILSFPNAEDLKDHVSVKHELNSKNFKCDICECSFASEVSYNYHINKHARRYECGACAERCSSKRAVIKHYEMAHYHGTKQSSAKFSCEFCDKSFRWKASLRKHVESHRIETGQKRKPYCEPCRLSFTNTSNLQKHVKTSSKHQIQLKVRKLTESLPEDSSNPEKHQQRIDQIKCSVNSAKEKFPCPQCDKKFQWRGNLLRHLNSHVARANGELICEPCNRTFSSIATYKQHMKISRKHVSENDFKYMCSDCGKRFANKTRLKDHVDWEHLKNYVHTCPVCQKVFKSHTSLYLHKQVVHKKDNAEHLCDHCGKPFPNQAKLRGHMLALHSAQAAYKCSTCGARFSWLSCLSRHNKKLHGQHADQIKKQHVALRTIQ

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: iTF_00906467;
90% Identity: -
80% Identity: -