Basic Information

Insect: Conistra vaccinii
Gene Symbol: -
Assembly: GCA_948150665.1
Location: OX411342.1:9277805-9283235[-]

Transcription Factor Domain

TF Family: zf-C2H2
Domain: zf-C2H2 domain
PFAM: PF00096
TF Group: Zinc-Coordinating Group
Description: The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 16 0.0012 0.099 13.7 0.4 2 23 31 53 30 53 0.96

2 16 0.026 2.1 9.5 0.3 3 23 80 101 78 101 0.94

3 16 0.033 2.6 9.2 1.1 2 23 124 145 123 145 0.96

4 16 6.7e-07 5.4e-05 24.0 3.7 1 23 149 172 149 172 0.96

5 16 0.26 21 6.4 0.4 3 21 179 197 178 198 0.90

6 16 0.00011 0.0088 17.0 2.0 3 23 259 280 258 280 0.98

7 16 7.8 6.3e+02 1.7 0.0 2 23 305 327 304 327 0.89

8 16 0.00024 0.019 15.9 0.2 2 23 351 372 350 372 0.96

9 16 0.00027 0.021 15.8 0.8 1 21 376 396 376 397 0.96

10 16 0.65 52 5.1 0.1 1 23 438 461 438 461 0.94

11 16 0.98 79 4.6 0.2 2 23 487 509 486 509 0.94

12 16 0.0014 0.11 13.6 0.6 2 23 533 554 532 554 0.95

13 16 0.0002 0.016 16.2 0.0 1 23 558 581 558 581 0.97

14 16 0.57 46 5.3 0.6 1 23 585 608 585 608 0.96

15 16 0.0003 0.024 15.6 1.9 1 23 647 670 647 670 0.96

16 16 0.00063 0.05 14.6 0.4 1 23 680 703 680 703 0.95

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	16	0.0012	0.099	13.7	0.4	2	23	31	53	30	53	0.96
2	16	0.026	2.1	9.5	0.3	3	23	80	101	78	101	0.94
3	16	0.033	2.6	9.2	1.1	2	23	124	145	123	145	0.96
4	16	6.7e-07	5.4e-05	24.0	3.7	1	23	149	172	149	172	0.96
5	16	0.26	21	6.4	0.4	3	21	179	197	178	198	0.90
6	16	0.00011	0.0088	17.0	2.0	3	23	259	280	258	280	0.98
7	16	7.8	6.3e+02	1.7	0.0	2	23	305	327	304	327	0.89
8	16	0.00024	0.019	15.9	0.2	2	23	351	372	350	372	0.96
9	16	0.00027	0.021	15.8	0.8	1	21	376	396	376	397	0.96
10	16	0.65	52	5.1	0.1	1	23	438	461	438	461	0.94
11	16	0.98	79	4.6	0.2	2	23	487	509	486	509	0.94
12	16	0.0014	0.11	13.6	0.6	2	23	533	554	532	554	0.95
13	16	0.0002	0.016	16.2	0.0	1	23	558	581	558	581	0.97
14	16	0.57	46	5.3	0.6	1	23	585	608	585	608	0.96
15	16	0.0003	0.024	15.6	1.9	1	23	647	670	647	670	0.96
16	16	0.00063	0.05	14.6	0.4	1	23	680	703	680	703	0.95

Sequence Information

Coding Sequence: ATGCGTCCGTTATCCATCGCGCGACGGAATGCAGAAACTATCGTCCTGAACTCCACGGTATACCCCTTCCGACTGCCGGACAAAGCCCTCATGTGCGTATATTGCGGAGACAGCTACACTGACGCCACGCTGTTTCGACAGCATATGAAGAAAGAACATTTCTCCTTCAAAGTCCGAACCGCTTTCGCTCATATTGCTTACGAGTGCTACCTCAAAATCGATTGCACAGAAATGGCCTGCAGAATCTGCTTTGAATCCTTCTCAAGAATTGACGATACTGCACGACATTTAAACGAGAGACATGATGCCAAAATCAATTTTGACTTCCAATTAGGACTACATCCTTACAGATTCTTACAAGACAGACTCATGTGTGGGATATGTGATCTAAACTTCCCTTGTTTGCGACAGCTAAGTCGTCACATGTCTTCACATTTCTTAAACTTCACGTGCGACACATGCGGCAAGTCTTACACGACGAACAGCTCCTTGCAGCACCACATTCGATTCACGCACATAGCAGCCGAGAGAATATGCAGGAAATGCAAAGAGACGTTCAGTTCTTTAGAAGCTAAGAGGGAGCATACAATGAATTCGCCCGGCTGTTGGATGTATCAGTGGACCACATTGGAAATTCACGGACGTAGTGAGACAGAGAATGAAACAAAAAAGAAAATAGTCCTTGTTTACCAGACGCCGCAAAGGCGCAACGCTGAAATTATACTAACTTATTCAACCGCGTATCCGTTCAAAACTCGTTTTAGTCAAATTCTCTGCTCTTACTGCCACGAAGAATTTAACACCCTTACAGATCTCAGATACCACATGAAAACAGAACATATCAATTCAGGTTTCAAAAACGTCTTCTACAGAGCAAGGGACAATTTAATCAAAATCGATATCACTAACCTAGAATGTAAAATATGCGCTGAAGAAATCCAAGATATTGACGGCCTCATGAGCCATTTATATAGGGAACACAATAAGCCAGTGAAATTCAACGCCCGATATGGTGTCCTACCTTATAAGCAGACTTCTGATAACCATTGGACTTGTGTTTATTGTAACAAAGTCTTCATTTCTTTCATTGCTTTCAATCGACACATTGTTACCCATTTCATGAATTATAGCTGTGACAAATGCGGTACGACCTTCGTTTCGGATTATGCCTTGAAAGACCATCATCGACAAGTCAAGTGTTTCCGAACGGCTTACAAGGCTAGAAATGGAAGAGTTCTAAAACCTAGATCGAATGCCGAAATTATTCTGCAATATTCTACAGCTAGTCCTTTCAGGACATGGAAAAGTAACTTCAATTGTGTCTTCTGTAGAGTCCAAAGTAACGATCCCAGTGGTCTACGTATGCATGTCGTTACAATTCACGCGAATTATGACGTCAAAGCTGCCTTTTATAAGAAATTAGGGAAAGACTTTCTCAACGTTGATATAACAGATCTTCAATGTAAACTTTGCTTCATGCCTATTGACTCCTTCGACAGTTTGATTTACCATCTAAAGAACGATCATCAACAACCTATAAACACTGACGCTCAGATCGGCGTCTTACCTTTTAGACTAAACGATGGCTCAATATGGAAATGCACGATATGTCCGAACGAGTTCAAAGATTTTGTCTCCCTAAAGAAACATACTTCGGAACACTTCCAGAACTACGTTTGTGATACTTGTGGCGAAGGTTTTATCACTGAGTCTGCAATGATAGCTCACACTAAAATACCACACGAGAACAAATATAACTGCAGCCGATGTATCGCCACATTCTCGTCGCTAGATGAAAGGAATCTGCACGTGAAAACACAGCATACGTCATTGCCATACGTCTGCGTGTATTGCAAGGATAAACCACGCTTCGCAAACTGGGAGGTTCGCAAAAAACATTTGATGGCAGTTCATAACTATAAAACAGGAGCTGATAAGTACGATTGTACGACATGCCAAAAGTCTTTCAAAACCAGATCGGGGAAATACAACCATATGGCGAGAGTACATCGAATAAAAAAAGATACAGAACTTAGCTACCCATGCCCAAGTTGCCCAAAGGCTTTTACGACAAAACTGTTCTTGGACAAACATGTGGCCAAAAAGCATTTTGATGTTTGA
Protein Sequence: MRPLSIARRNAETIVLNSTVYPFRLPDKALMCVYCGDSYTDATLFRQHMKKEHFSFKVRTAFAHIAYECYLKIDCTEMACRICFESFSRIDDTARHLNERHDAKINFDFQLGLHPYRFLQDRLMCGICDLNFPCLRQLSRHMSSHFLNFTCDTCGKSYTTNSSLQHHIRFTHIAAERICRKCKETFSSLEAKREHTMNSPGCWMYQWTTLEIHGRSETENETKKKIVLVYQTPQRRNAEIILTYSTAYPFKTRFSQILCSYCHEEFNTLTDLRYHMKTEHINSGFKNVFYRARDNLIKIDITNLECKICAEEIQDIDGLMSHLYREHNKPVKFNARYGVLPYKQTSDNHWTCVYCNKVFISFIAFNRHIVTHFMNYSCDKCGTTFVSDYALKDHHRQVKCFRTAYKARNGRVLKPRSNAEIILQYSTASPFRTWKSNFNCVFCRVQSNDPSGLRMHVVTIHANYDVKAAFYKKLGKDFLNVDITDLQCKLCFMPIDSFDSLIYHLKNDHQQPINTDAQIGVLPFRLNDGSIWKCTICPNEFKDFVSLKKHTSEHFQNYVCDTCGEGFITESAMIAHTKIPHENKYNCSRCIATFSSLDERNLHVKTQHTSLPYVCVYCKDKPRFANWEVRKKHLMAVHNYKTGADKYDCTTCQKSFKTRSGKYNHMARVHRIKKDTELSYPCPSCPKAFTTKLFLDKHVAKKHFDV

Similar Transcription Factors

Sequence clustering based on sequence similarity using MMseqs2

100% Identity: -
90% Identity: -
80% Identity: -