Cvac002328.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411341.1:3161893-3203140[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 14 7.9 6.3e+02 1.7 1.5 6 15 58 67 55 70 0.76 2 14 1.2 93 4.3 0.2 1 23 496 518 496 518 0.95 3 14 0.00054 0.043 14.8 2.2 1 23 531 553 531 553 0.96 4 14 0.00056 0.044 14.8 0.9 1 23 559 581 559 581 0.98 5 14 0.021 1.7 9.8 1.0 5 23 587 605 586 605 0.93 6 14 0.00056 0.044 14.8 0.9 1 23 611 633 611 633 0.98 7 14 1.3e-05 0.001 20.0 2.4 1 23 640 662 640 662 0.99 8 14 2.4e-06 0.0002 22.2 0.4 1 23 668 690 668 690 0.93 9 14 8.1e-08 6.5e-06 26.9 0.1 1 23 696 718 696 718 0.98 10 14 2.4e-05 0.0019 19.1 2.7 1 23 724 747 724 747 0.96 11 14 0.00011 0.0088 17.0 2.6 1 23 753 776 753 776 0.96 12 14 8.5e-05 0.0068 17.4 2.3 2 23 783 804 782 804 0.97 13 14 1.2e-05 0.00094 20.1 1.0 1 23 832 854 832 854 0.97 14 14 0.031 2.5 9.3 0.1 1 23 860 884 860 884 0.93
Sequence Information
- Coding Sequence
- ATGAATCAGTGTTGCTTTATCTGCAACAACAGGGCTGGCCTCTCACTAAGAAATGCTTCCAGCCTGTTTGGAGAACATAACACATTACAATCTGGCAAGAAAGTGTCGGATGTTGTTAGTGAGATTGTAGGCAAACCGGTGCTTGAGAATAAAGTACATACCAATATACTGTGCAAGAAATGCTTCAAGACATGCTCTGAGTATGATAGCATTCAAGTCAGGTTACAAACAATAAAAACGGATTTACAAGGACAATTCAAGTTATCATTACCTAGTCATAATTTAGACTATGAAAACTATGAGAAGAATGTGTGTTCACCGGCGAAGCCTAAACCAATCCTTGGAAAGAAGTTGGTGCTGCCAGCATCAAAATTACAACCAATACCACCGGATTTGTTGCTCAAAGTGGGGAAATTGGCATCATTCTCTAAATCTAACATGATTTTACCACAAGTTAAGCCGTCCACAGCGTCAACGTTAAACTTAAAAGTAACCGTTGGATCATCAGTCTTAACACAAACGATAAAAACATCAACCAGTAAACAAATTGAAAAACCTTTAGACTCAAATTCCATCCTGACTTCACTCTCAAACGCCTTGAAAGATGACATAGAAAATATGGTGACTGCTCAAAGTAATATGAACTCTATGAGCCAAAAGAATTCAATGTTGAGTTTCAATGTGAACTCTTTGCCTAAGGATTTCCTTTCTGGGGCTATTTTGAAGAAAATGGATGAAAAAGAAGATGATTATGAAAAGAGGGATGAGACGAATGATGACCATCCTATGGAGATTGATGAAGATTGTTTGTCTGTGGTTCCTGTAACGTCTGCCAATAGCGGAAACTTAGTACTACAAGTTGAAGGACTACCGTCAAAATCTGAGCCTGCTGCCGAAGTGAGCGACTACCTAAACCTGCCGTCGTTAGATGGTGACGCTGATGAGGAGAATGACGCTCAGAAGTACATCCTCGGCAAGTTGGAGATACTCAACGAGGAGGATGAAGACGATGACGACGATGAAGGACACACAATAGTCGTAGACAGTGAAAACGGCTCAATTCTCCGGATGGTGGCTGGACAGAAGTTTATCTATGAGGGCGGGGAGATATCGCTGGTGATGCCCGATGATGATGATGATCAGCAAGACGGTGATCATCTCGAGAATGGTGATAGTCAAGATTCTAATGATGAATCTCAGATTGAGTTACAAGTATCTGGCGACGAGGAAACAGCGAACGCTATTATTGCAGCTGCTCAAGAACAAGGCGGTGCCTTCATAAAGGTGGAGTCAGGCGAGATGTTCCGCGTCAAGTCAGTGTCGAGCGCGACGCCCGAGCCAGCGGACGCGCCCTTGCAGATCGTGGCGCAGGAAGGGAACTTATTCAAGTGTTTATTGTGCGAAAAAAATGACGAAACTCCTTCAAGTGTTGAAGATGCAGACACAATGATGCGTCACTTAAAATCGCAGCACGACGCGAGAATATACCTGTGTCGGTTCTGTGGTGCTGTCATGAGGAAACGCACGGAATATGCCACGCATATAGCGTCTCACGCGCACGACGCAGCCGGCGCGGCCAAGCCGGGCGCGCACCGCTGCGGCTTGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCCAGGCCCTACGCCTGCGCGCTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCATCTGAAGACTCATGCGCGACAACATCACTTGTGCGGCAAGTGCTACAGCTCGCGCACGCTGCTGGCCGAGCACGCCAACCTGCACTCGGGCGCCAGGCCCTACGCCTGCGCGCTCTGCGGGAAGGCCTTCGCCTCCAAGTACACGCACCAAGCGCATCTGAAGACTCATGCGGTTCGTCCACGGCCCTACAAATGCACTCAATGCGGTAAATCGTTCCTCACACAACAAAACCTGAATCAGCATGAGAAAACACATTCTGGAGTCAAGGATTTTGTCTGTAATATATGCAACAAAGCCTTCAGCACGCAACACAACCTGGAGGTGCACGGCGTGGTCCACTCCGGGAACAAAGCATTTGTGTGCAGTGTGTGCGGGAAGGCCTTCGCCAGGAGAGCGGAGCTGAGAGACCATATGCGGATACATACAGGCGAGCGTCCATTCTCGTGCGATATCTGCGGGTCTCGCTTCACTCAGCGCTCGAACTTACATTCGCATCGCAGAGCGACGCACTTCGACGACAAACGATACCACTGCGAACTGTGTCCGAAGAGGTTCAAGAGGAGGAGATTACTGGAATACCACATAAAGGCGTCGCACACCGGCGAGCGGCCGCTGAAGTGCGGCATCTGTCACCTGTCCTTCGTGTACCCCGAGCATTACAAGAAGCACGTGCGCATACACAGCGGGGAGCGGCCGTATGTGTGTGAGTTGACATACATACATTACAAGAAGCACGTGCGCATACACAGCGGGGAGCGGCCGTATGTGTGTGAGATCTGCGGCAAGTCGTTCAACTCGCGCGACAACCGCAACACGCACCGCTTCGTGCACAGCGACAAGAAGCCCTACGAGTGCGTCGCGTGCGGCGCCGGCTACATGCGCAAGCAGCTGCTGTACGCGCACATGAACACCAGCGGACATTTGGCGGAATCGATAGTAGTCAATCAACCTAGGGTTATCAAAGTTACTGAAAATGGCACAAACCAACCAACAGAAATAACACACATAGAAGCGAAAAATAGTAAATTTGACTCGATATTTGAATCCAGTGAATTGGAAGCGAGCGTAAAATCTGTCGTGAAAGCGGAAACGGAAGTGAATCTAGAAGACGCAAAGTTCTACATAACGGATGATAAAAAGCTAATATTACAAGATAGTGATAATATAGGAGAGAGAGCTGAGGGCACTATTCTAGAAGCGGTGGATGCCGATCAACTTGGCGAACAAACTGAGATCGTAGCAAATGATGAAAATGGCGGAATGGTGCGTCTAATACAAATCAAACTACCGGACGGGAACAACGGATGGGTCGCCATTAACCGCTGA
- Protein Sequence
- MNQCCFICNNRAGLSLRNASSLFGEHNTLQSGKKVSDVVSEIVGKPVLENKVHTNILCKKCFKTCSEYDSIQVRLQTIKTDLQGQFKLSLPSHNLDYENYEKNVCSPAKPKPILGKKLVLPASKLQPIPPDLLLKVGKLASFSKSNMILPQVKPSTASTLNLKVTVGSSVLTQTIKTSTSKQIEKPLDSNSILTSLSNALKDDIENMVTAQSNMNSMSQKNSMLSFNVNSLPKDFLSGAILKKMDEKEDDYEKRDETNDDHPMEIDEDCLSVVPVTSANSGNLVLQVEGLPSKSEPAAEVSDYLNLPSLDGDADEENDAQKYILGKLEILNEEDEDDDDDEGHTIVVDSENGSILRMVAGQKFIYEGGEISLVMPDDDDDQQDGDHLENGDSQDSNDESQIELQVSGDEETANAIIAAAQEQGGAFIKVESGEMFRVKSVSSATPEPADAPLQIVAQEGNLFKCLLCEKNDETPSSVEDADTMMRHLKSQHDARIYLCRFCGAVMRKRTEYATHIASHAHDAAGAAKPGAHRCGLCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHARQHHLCGKCYSSRTLLAEHANLHSGARPYACALCGKAFASKYTHQAHLKTHAVRPRPYKCTQCGKSFLTQQNLNQHEKTHSGVKDFVCNICNKAFSTQHNLEVHGVVHSGNKAFVCSVCGKAFARRAELRDHMRIHTGERPFSCDICGSRFTQRSNLHSHRRATHFDDKRYHCELCPKRFKRRRLLEYHIKASHTGERPLKCGICHLSFVYPEHYKKHVRIHSGERPYVCELTYIHYKKHVRIHSGERPYVCEICGKSFNSRDNRNTHRFVHSDKKPYECVACGAGYMRKQLLYAHMNTSGHLAESIVVNQPRVIKVTENGTNQPTEITHIEAKNSKFDSIFESSELEASVKSVVKAETEVNLEDAKFYITDDKKLILQDSDNIGERAEGTILEAVDADQLGEQTEIVANDENGGMVRLIQIKLPDGNNGWVAINR
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00726717;
- 90% Identity
- -
- 80% Identity
- -