Cvac009383.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411333.1:8886303-8886899[+]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 2.7e-07 0.00021 21.5 0.0 2 38 16 51 15 55 0.93 2 2 8.9 7e+03 -2.6 0.0 33 43 133 143 133 144 0.83
Sequence Information
- Coding Sequence
- ATGGCGCGTACTAAAGCACTTCAAAGAAAAAAGGGAGATCATTCAAAAGAAAATATGCTTCGAGCTATACTTATGTACAGAAAGGGAAAGAGCCTGAGAAAAGCTGCACAAGAGTGCGATGTTCGGTATCCTACGCTGTTTCGCTACCTAAAAAAATACAAGGATATGGATGATGCATCCCTAGCAGCTCAAAGATTGACTCCAAACTATGAAGTTAATCAAACTTTTACAGTCGAACAAGAAACAGCACTTAAAGAATATATTGGAGAATGTGCATTAAAATTTTACGGATTAAGTACCAAAGATGTGCGCCGTATATCTTATCAAATGGCGAAAATTAATCAAATTAAATGTCCCGCTAGTTGGGAAAAAGACCAAATGGCAGGCATTGAATGGCTTCGGTCTTACAAATCAAGGCATCCAGAATTAACACTGAAGAAGCCTGAAACGTGTAGCATAGCACGTGCTACCGCATTCAATAAAGAAACTGTCAGGGCTTTCTTTGATAACCTGAAAAATGTCATGGAGCGTCATCCTTCCTTTGGTAACGGTTGCAGAATCTACAACTTAGACGAAACTGCAACAACAACCGTTTAA
- Protein Sequence
- MARTKALQRKKGDHSKENMLRAILMYRKGKSLRKAAQECDVRYPTLFRYLKKYKDMDDASLAAQRLTPNYEVNQTFTVEQETALKEYIGECALKFYGLSTKDVRRISYQMAKINQIKCPASWEKDQMAGIEWLRSYKSRHPELTLKKPETCSIARATAFNKETVRAFFDNLKNVMERHPSFGNGCRIYNLDETATTTV
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -