Cvac022588.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411319.1:15294968-15297673[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 2 9.3e-08 7.3e-05 22.9 0.0 1 38 12 50 12 55 0.91 2 2 1.2 9.7e+02 0.1 0.1 17 25 106 114 104 114 0.88
Sequence Information
- Coding Sequence
- ATGGATGACCCCAACAAGAAGAACAGAAAATACTCGGAGACCGATCTCAAAACCGCTGTTGAAAATGTTTTGAGTTCAACAATGACAGTTTACAGAGCTTCGAAGGAGTTTAAGATTCCATGGTCGACATTAAAAGAGAATGTGACGAAGTACAAAACTCTACGAGAGGGTAATCAAGATGCACAGATCGTAATGTCCAAGATAGGAAGGCCGTTTGCGTTACCTGTTGAAATAGAACAAAAGTTACTGGCCTATATTATTGAAATGCAAGAACGTGGTTTTGGTCTTACAGTTACCAAAATAAAGCAAATAGCATTATCTTTAGCAAAAGCTGCGAACATTTGCTGCACATTCAATGACAAAAAGGGATCTGCAGGTTGGAATTGGTGGGTGAAGTATAAAGAACGCTACGGGTTGTCTTTGCGAACACCGGAAAATCTTTCAGCAGGTAGAGCGATTTGTTCAAACCCGGTTATTTTAGAAGATTTTTATGACAAATTAGAAAAACAGTTAAgGTATAAATCTAAATGGTTTGCTTATGAAGCATTCAGTTTTTTACATGACAGGAATAACCCTATTGATGCAGTGACTACGGATGTGCTGCACGCTACCTGCGGACGCTACCTGTGCGTCATACTGCGCCGCTACCTGTGCGCGCTGCCTGTGTGCGCTACCTGCGCACACTACCGAAGGCTGACAAGCCTGTGGCCTATCGCCGCGAGCCTGTGCTGA
- Protein Sequence
- MDDPNKKNRKYSETDLKTAVENVLSSTMTVYRASKEFKIPWSTLKENVTKYKTLREGNQDAQIVMSKIGRPFALPVEIEQKLLAYIIEMQERGFGLTVTKIKQIALSLAKAANICCTFNDKKGSAGWNWWVKYKERYGLSLRTPENLSAGRAICSNPVILEDFYDKLEKQLRYKSKWFAYEAFSFLHDRNNPIDAVTTDVLHATCGRYLCVILRRYLCALPVCATCAHYRRLTSLWPIAASLC
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -