Cvac019687.2
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411342.1:6952260-6956110[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 3 0.0032 2.5 8.4 0.0 4 35 20 50 17 56 0.81 2 3 6.7e-08 5.3e-05 23.4 0.0 1 42 342 384 342 387 0.85 3 3 10 7.8e+03 -2.8 0.1 12 22 461 472 460 472 0.72
Sequence Information
- Coding Sequence
- ATGGGACGAAACACGGTAGGAAGGGAAGCCCGTAAAAAAGGGTATCACACCGGAGAAGATATCCAAAGAGGAATAGATAAGCACTTGTCGGGACTGAGTATCAGAAAAGTAGCCAAAGATTGCAACCTTCCCTATCCAACACTGCGAAGAATTGCCTACCAAATGGCAGTGATTAACAAAATCGAAATGCCGCCATCGTGGATAGTCCATGAAATGGCAGGCCGAGATTGGATGAGGGGGTTTAGGGCAAGACATCCTGAATTGTCTGTGAAAAAACCCGAGCCTTGTAGTATAGCAAGAGCTACAGCATTTAATAAAATAAACGTCCAAAAATTTTTCGACAACCTTAAGGAAGTTTTAAGTCGCACTCCATCTTTTGCTAATGGAAGCCGAATATATAATCTCGACGAAACCTCCACGACAACAGTGCAACGTCCACATAAAGTGCTGACAGCTAAAGGACGCAGTGTCTGTAAAGTCACAAGTGGCGAACGTGGAATCTTAGTTACAACTCGCTGTATTGTAAATGCGATTGGCCAGGCTTTACCTCCAGCAATGGTATTTCCAAGAAAAAACTTCAAGGCACACATGCTGTATGGGGCACCTCCAGGGACACTTGGGTTAGCCGCACCTAGCGGTTGGATGAATGCGAAATTATTTGTAGAAGTAATGAAGCATTTTATCCAGTTCACTTCAGCATCGAGGGATAACCCAGCTTTGCTTATTCTTGATAATCATGAGAGTCATCTGTCTATAGAAGCTCTAGACCTAGCTAAAGCCGGAGGTGTGACTATACTTACACTTCATCCTCATACCACGGCTAGGATGCAACCTTTGGATGTCGGACTAAATGGCCCTTTCAAGTCGTTTTATAATGGGGCAATAGAGTCATGGTTATTACATAATCCGGGGAAACCTTTAAGCATTTACAATGTTGCCGAATGTGTCGGTATAGCATATTTGAGAGCTATGACTCCAACAAACATAGGAAGAAAGGCTTCTGGCTCTAATAGGGCTACATGGAGTGAAGAAGACTTGGAAAAAGCCATTACTCTGGTCAAAGATAAAACATTGAATTTTTTTCAAGCAAGTAAAGAATTCAATATTCCTTATAGAACTCTGCGCCGTCGGTTTCTCACAGGGAATACTAAAAAAGGGCGACTTGGAACTGAGTCTGTGTTTGGAAACAATGAAAAAAAGATTGTTAATCATATCGAGAAATTGCAAAACCGTGGGTTTGCGCCTACCATTAATGATTTACGCCAGTTGGCTGTTCAATTTGCTGAAAGTTTAAACCTTAAACATAATTTTAACAAGGAAAAGGGTAAAGCAGGATATGATTGGGTAAAATCTTTTTTGCGTAGAAATCCCGAAGTTTCAGTAAGGAAATCAGAAGGAGTGTCTCTACAAAGAGCTAAAGGAATGACAACAGAGGAAGTTTATCCTTTTTTAGATTTATTGGAGTCACTATTTCAGGAACACAATTTTATTAGTAATCCAAATAAAGTTTTCAATATGGACGAAACAGGTTTGCAGTTAAATAACAAACCATCTCATGTTCTTGCAATGAAAGGATCTAAATCAATTCCACAATTAACTTCTGCAGAAAGAGGAGAAAATATTTCTTTAATTTGTTGTTGCTCCGCTGAAGGTAATTTTATGCCACCTGTTGCAATTTTCAAAGGGAAAAACAAAAAGCAAGAGTTTGCTGATGGAATGCCTCCAGGAAGTGACGTATATATGAACGAGAAATCAAGTTATATCAACACTGATCTCTTTTTTAAATGGTTGAAAGAACATTTTTATCCTAGGAAACCTCCTGGATTTCGCGCTTGTGGAGTATTTCCATCCAACAGAAATGCAATTCCTGAATATGCTTTTATAAAATGA
- Protein Sequence
- MGRNTVGREARKKGYHTGEDIQRGIDKHLSGLSIRKVAKDCNLPYPTLRRIAYQMAVINKIEMPPSWIVHEMAGRDWMRGFRARHPELSVKKPEPCSIARATAFNKINVQKFFDNLKEVLSRTPSFANGSRIYNLDETSTTTVQRPHKVLTAKGRSVCKVTSGERGILVTTRCIVNAIGQALPPAMVFPRKNFKAHMLYGAPPGTLGLAAPSGWMNAKLFVEVMKHFIQFTSASRDNPALLILDNHESHLSIEALDLAKAGGVTILTLHPHTTARMQPLDVGLNGPFKSFYNGAIESWLLHNPGKPLSIYNVAECVGIAYLRAMTPTNIGRKASGSNRATWSEEDLEKAITLVKDKTLNFFQASKEFNIPYRTLRRRFLTGNTKKGRLGTESVFGNNEKKIVNHIEKLQNRGFAPTINDLRQLAVQFAESLNLKHNFNKEKGKAGYDWVKSFLRRNPEVSVRKSEGVSLQRAKGMTTEEVYPFLDLLESLFQEHNFISNPNKVFNMDETGLQLNNKPSHVLAMKGSKSIPQLTSAERGENISLICCCSAEGNFMPPVAIFKGKNKKQEFADGMPPGSDVYMNEKSSYINTDLFFKWLKEHFYPRKPPGFRACGVFPSNRNAIPEYAFIK
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -