Cvac009279.1
Basic Information
- Insect
- Conistra vaccinii
- Gene Symbol
- -
- Assembly
- GCA_948150665.1
- Location
- OX411333.1:7500540-7501103[-]
Transcription Factor Domain
- TF Family
- HTH
- Domain
- HTH_psq domain
- PFAM
- PF05225
- TF Group
- Helix-turn-helix
- Description
- This DNA-binding motif is found in four copies in the pipsqueak protein of Drosophila melanogaster [1]. In pipsqueak this domain binds to GAGA sequence [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 1 9.4e-14 7.4e-11 42.1 0.0 4 40 16 52 13 57 0.86
Sequence Information
- Coding Sequence
- ATGGATCACAAAAAGAAGTACAATAGGTTTCAATACAGTCAACAAGCACTTGAAGCAGCTCTTAAGTCAATTGCTAATGGAGAACTAAGTATCAATAAAGCAAGCAATGTGTACAAGATACCAAAATCGACTTTACATAATAAAATCACAAACAAGGTACCTTTGCAAAGAAAAATGGGCCCTCAGTCCGAGCTTACTGTAGATGAAGAAGCTAAGATTTCTGACTGGATTATAAATAAAGCTAAATTAGGTTTTCCAATGCACCCAGAAGAAGTTTTCGATACTGTTGAAAATTTTATGACCACTAATAATAGGAAAAATAAGTTTATCGGGAATAGACCAGGAAAAAAGTGGCTTAGTTTATTCTTAAAAAGGCATCCTGAGATTACAAAAAGGAATGCGGAGATTATATCCAAAGGCAGAGCCGCAGTTACTGAACAAGCTATCAGAGCTTGGTTCAAGGAACTCGAAGAGTTTTTAACAGAAGAACAAGCATTGGATATAAAAGACGACCCCAGTCGCATATTTAATGCCGACGAAACAGGTGCCCGAAAACCGGAATAA
- Protein Sequence
- MDHKKKYNRFQYSQQALEAALKSIANGELSINKASNVYKIPKSTLHNKITNKVPLQRKMGPQSELTVDEEAKISDWIINKAKLGFPMHPEEVFDTVENFMTTNNRKNKFIGNRPGKKWLSLFLKRHPEITKRNAEIISKGRAAVTEQAIRAWFKELEEFLTEEQALDIKDDPSRIFNADETGARKPE
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- iTF_00952620; iTF_00745593; iTF_00711770; iTF_01029147;
- 90% Identity
- iTF_01029147;
- 80% Identity
- -