Basic Information

Transcription Factor Domain

TF Family: zf-NF-X1
Domain: zf-NF-X1 domain
PFAM: PF01422
TF Group: Zinc-Coordinating Group
Description: This domain is presumed to be a zinc binding domain. The following pattern describes the zinc finger. C-X(1-6)-H-X-C-X3-C(H/C)-X(3-4)-(H/C)-X(1-10)-C Where X can be any amino acid, and numbers in brackets indicate the number of residues. Two position can be either his or cys. This family includes Swiss:P40798, Swiss:Q12986 and Swiss:P53971. The zinc fingers in Swiss:Q12986 bind to DNA [1].
Hmmscan Out: # of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc

1 5 1.9 1.9e+04 -3.5 7.3 10 18 4 13 2 13 0.72

2 5 1.6 1.6e+04 -3.2 0.7 6 18 40 44 39 45 0.44

3 5 1.7e-09 1.7e-05 25.4 9.3 1 16 50 65 50 75 0.93

4 5 4.1e-07 0.004 17.8 13.2 1 19 82 101 82 101 0.97

5 5 0.87 8.5e+03 -2.4 0.2 5 9 118 122 118 122 0.82

#	of	c-Evalue	i-Evalue	score	bias	hmm coord from	hmm coord to	ali coord from	ali coord to	env coord from	env coord to	acc
1	5	1.9	1.9e+04	-3.5	7.3	10	18	4	13	2	13	0.72
2	5	1.6	1.6e+04	-3.2	0.7	6	18	40	44	39	45	0.44
3	5	1.7e-09	1.7e-05	25.4	9.3	1	16	50	65	50	75	0.93
4	5	4.1e-07	0.004	17.8	13.2	1	19	82	101	82	101	0.97
5	5	0.87	8.5e+03	-2.4	0.2	5	9	118	122	118	122	0.82

Coding Sequence: ATgtaTACTTGTCACTCAGCATTACAATGTCCACCATGTTTTGTTTTAACCACAAAATGGTGTTTTGGTCATCATGAACAACGAAAAACAATACCATGTAATCAAGAAAGTTTCACTTGTGGTATGCCATGTGGTAAAGATTTACGTTGTGGCCGTCATAAATGCATTAAACTATGTCATGATGGTCCCTGTGAAGCAGAATCCGACATTTGCAAACAGTCATGTAAAACTAAAAGATATGATTGTGGTCATGCATGTATGGCACCATGCCATGACGGTGAATGTCCTGATACGCCATGCAAAGAATTAATTGAAGTACAGTGTGAATGTGGAAACCGTAAACAACAACGAACATGTCAAGAGGTTGTTAGAGAATATCGTAGAATCGCAACGGCAGCATTAGCATCGTCTGTAGCTGAAATGCAACGAGGCAACACCATTGAACTAAGTGATATTATGGGACCAATGAAGCCAACTAACAATAAaacgcTTGAATGTAACGATGAATGTAAAGTACTAGAACGCAATCGTCGTTTGGCCATTGGGTTACAAATACGAAATCCAGATACTTCACAAAAACTTTTAACCCGTTATTCCGATTTCGTAAAAAGTTGGGCAAAAAAAGATCCGCATTTGGTTAAAACAATACATGATGCATTAACTGATTTAGTTCAATTAGCCAAACAAAGTCAACAAAAATCAAGGCGCCATTCATTCCCCGTTATGAATCGTGAAAAACGTCAGTTAGTGCATGAAATGTGTGGTATGTTTGGTGTTGATTCTGAGGCTTATGATGCTGAGCCAAATCGTAATGTTGTCGCTACAGCATATAGAGAAAGGTCCTGGCTTCCAGCAATGAGTATAATGGAGGTTATGAAACGTGAAGCAGGTCAGCGTAGAGTTCCAGTTCCAAATAATAATGCATGGGGCGTTaaaaaatga
Protein Sequence: MYTCHSALQCPPCFVLTTKWCFGHHEQRKTIPCNQESFTCGMPCGKDLRCGRHKCIKLCHDGPCEAESDICKQSCKTKRYDCGHACMAPCHDGECPDTPCKELIEVQCECGNRKQQRTCQEVVREYRRIATAALASSVAEMQRGNTIELSDIMGPMKPTNNKTLECNDECKVLERNRRLAIGLQIRNPDTSQKLLTRYSDFVKSWAKKDPHLVKTIHDALTDLVQLAKQSQQKSRRHSFPVMNREKRQLVHEMCGMFGVDSEAYDAEPNRNVVATAYRERSWLPAMSIMEVMKREAGQRRVPVPNNNAWGVKK

Sequence clustering based on sequence similarity using MMseqs2