Clon011717.1
Basic Information
- Insect
- Condylostylus longicornis
- Gene Symbol
- lola
- Assembly
- GCA_029603195.2
- Location
- JAQSLO010000048.1:769123-818869[-]
Transcription Factor Domain
- TF Family
- zf-C2H2
- Domain
- zf-C2H2 domain
- PFAM
- PF00096
- TF Group
- Zinc-Coordinating Group
- Description
- The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger. #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C] Where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter [1].
- Hmmscan Out
-
# of c-Evalue i-Evalue score bias hmm coord from hmm coord to ali coord from ali coord to env coord from env coord to acc 1 10 0.00012 0.014 16.5 1.2 1 21 64 84 64 85 0.94 2 10 0.002 0.22 12.7 1.3 1 21 521 541 521 542 0.94 3 10 0.007 0.75 11.0 2.2 1 23 551 573 551 574 0.95 4 10 4.1e-05 0.0045 18.1 0.3 1 21 921 941 921 942 0.95 5 10 0.44 48 5.4 1.7 1 23 950 973 950 973 0.97 6 10 0.0035 0.38 12.0 2.5 1 22 1361 1383 1361 1383 0.95 7 10 0.00012 0.013 16.6 1.7 1 21 1750 1770 1750 1771 0.97 8 10 0.28 30 6.0 0.0 1 21 1802 1822 1802 1823 0.95 9 10 0.0073 0.79 11.0 0.3 2 23 1829 1850 1829 1850 0.98 10 10 0.00036 0.039 15.1 0.9 2 23 2395 2417 2395 2417 0.97
Sequence Information
- Coding Sequence
- ATGAGAAACAATAATGAAAACCATTTTTATCATAATCAAGAGGATAATAACTATAAAGAAGATGAAGAACATGGGATGCGAGATGGCTTGGAAATACTTCGTACAGACTCCAtaggtgaaaataaaaaagatgagAATTGGAAACGGAAATTTAGATATGAGCAGTTAGAAGAACTAGAATTGAAAACACACATATGTCCAAATTGTGAAAAATCGTATGcatacaaaaagaatttaaacaggcatttaaaatatgaatgcgtaAAACATGATAAGAGTGAACAAACAGATATCACTACAGATGAATTTGAATTAGACGATTGCTTACTGGAAAGTAACGATATTGTTATAACCCAAAACAAAGATGGTTTTGTGTTACATGTTAAAAAACTAGGTAATGTTACGTCTTCAAAATTGGCTACTACAGATGAAGAAAATCAAGATCAACAAGAACAGCATCAATCACAACATCTACAGCATCATCAACAACATCATCAAGATCAATCACATTCGCATCAACAACAGCATGTACTTCATCAGCATCAtcagcaacagcagcaacaacagcaacaacaacaacaacagcatcaacaacaacaacatcatcacCATCAGCAACTACATCATCACTTACAACTTGCAACACCCACCAATGTTGTTGCAGTACCAGGAGTTCATCAGTTGGCATCTGATGACAATCAAGGGAAAACTTTAACGAGTTTGCATCCCATAAAACTTCCATCTGCTGAATGTGaattaatcaacttaaaaaaaattcaaccaaCAACATCTGCTATTGCGACAACAGCAATTATTCCGCCGCAGCATTTACAAGAGCATCATACGAATATTGTGACCACAAATTCACAAACACTTAATACAATATTAGGAATACGTGAGGTGaacattcaacaaaaaaatttgggtTCACGTATTAAATATCgtggaaaatattcaacaagtcCAATACAAGATGCAGACGGTACTGTACAATTGTTGGCTACAATATCCCCAAAACAAGAAATTGGTCCAACAACGACAACGGTTATGGCTggcgaaaaaaaatttgaaatagcgGAAATAACTGATTTGAATACACCTCAGGCATCCATAATATCTGATTTAGTTAAATATGCCGAGATCGATGACATTGAATTACCTGATGGTACTAAAATTGGTATTGGGTATGCCCCAACAGAGATTAGTGAACACCATATACAGACGGCACAAGCAGTACAACAAGTTCAACAAGTAACTGATTCACCATCACATGAAATAATACAACACGATCGTAATAGTGGTTCTGGTCAAGAAACAACAATAACTAaaagttatacaatattaacaaCAACTCCAATAAAACAAACACAACCGTCACAGCAACATCAGCAGCAAGTGACCACACAACATCAAATTCAACAACATCAAGCACAACAACAAATGCAAATACAGCAAcctcaacaacagcaacaacagcataCAACAACGACTACTACGACGACTTATGAATTATCTCTAAGTGATTCATCATTGACGCAAAGTgaagataatgaaaaattgtatgttTGTCGTCATTGTGGTAAAAAATATCGTTGGAAATCAACTTTAAGGCGACATGAAAATGTAGAATGTGGTGGAAAAGAGCCATGTCATCCTTGTCCGTACTGCACTTACAAGGCTAAACAGCGGGGAAATTTGGGCGTTCATGTCCGCAAACATCATCCAGAGAAACCACAATTAGAAAGTATACGTGGGCCTGAAGACTTGAGTATAACAAGGATAGCTGGTTTAACATGGAATGAATGGAATGCACGCTTAGCAATGCCTTTAGTAACGCAATTACGTGAAGGTCCACATTCACTATTTCCTACCGACTTGTCTTTAAAGTGGGGACAACAAAATACATCTGAACAAAATTCTTCTTCTTCAGCTGCGTCATCCGTGCACGAAAGGAAGTCACCAGCGTTATTATTTTCTCCACCAAACGGATCTAGTACACCTGGTGGTGGTATTATTACTACAAACAATCGGGGTGAGCGCGTTACTCGCAGTGAGCGTACCAATGTTGAACTTGAAAAACAAAGCCAAGACAaggaacataataaaaataatcgtgATTCAGAAACACAAAGTAGACAGCAGAAATCTGAACGCGAATTAAGATCTAGCAAATCTGCTAATATCAATGCAGATACGACAACATCATTAATTGTAAATGCACacgcaaatataaataatactggttataataataatagtaacaataataataataataataataataataataataacaaaagtaataacaataacaataatgataatagtaatgataatattaataataataataacaataataataataataataataacaataataataatattaataataatgatgataacaaaaacaataacaacaataataataacagtaataataataaaaataatatagataaaaatgataaagacaataaaaaaaataacaatgatacTGGTGGTATTGATATTGACTGTGATTATAAACCTTTagctttggaaaaatttaataatagtaattcaaATTCTTTGAATGTTAATAATTCGGAACAGCAACAAGCAACTTCAGGTCTAGTTCGCTTAAGTTTGTTTAATGCATTAAGTTCTAGTTTATCGGCAGCAGCGGCGGCAAATTTAAGTGTTAATTCGGGTAATAACAGTCTTAATTCTGGTTCAAATAATAACGGTAACTATTCAGGTGAAGGTGGTCATCCTTGTCCTGAGTGCGGCCgtgtatacaaattaaaatcatcTTTACGAAACCATCAAAAATGGGAATGTGGTAAAGAACCACAGTTTCAATGTCCATTTTGTGTTTATCGTGCCAAACAAAAAATGCATATTGGTCGTCATATGGAGCGTAtgcataaagaaaaatttagtaatttagaTTATAAGGTTAAAGAAGAAGCGATAGAAGCTGCTGTTGCAGCAGCTTCAGCTgcaaatttcaCTTTACCAAAGTTGATAccaaattcaacaattttaactAATAATGACGAAGAAATAGCTGTTACAAACGATTCAAATGAAAcagatattgtaataaaaatagaacGCAATTCACCTAGTCCCGCAGCATCATTgctattaaacaatttaagtgATTTTTCATGCGATTTTGACGAAGATGATGAAGAAAGTGGCAGTGAGGAGTTTGATGGCTCAACACCTTCTGAATTTAATTATGACATTAAACTGTCCAGTCCCGTGTCTTGGGCATTTCAACcagttaaaatagaaaatttagatGAAGATTATGATAATATACCAATAATTAATCAGCCAATTCATTTACCAACTACAATACAAACGCAGGACCAAAACTCACAAACTATTATCTCGTCTGCCGTAACGAACGGTGGTCTCGCATCTGCTGTAGCTGCAATTGCTAATCAATCTATAGCGTCTATAAAAAAGTCTACAACAACATTAGTACCAATTAAACAAAACTCAcaacaaagtaaaataaatacaagcgaacaattattaaaaatatttagctcTGCTGCATTAACAACAGCAACGACAAAATTAAGTAATAGCAATAACGATTTACCAATATTAGCTGGAAATACATCTTCCACATTAGTGACGATCTTACCAACTTTACCAAATACAACTATAGCTAAAAAAGACAGTATAACAAACCAAATAATACCAAAAGGAACGAGTATACGTTTGGTACAACAATTGGATTCTCCATCAGTTACaccaataatcaataataatttattgtcatcatcatcaacCACGACAGTGTCATCGACAAACAATAACACAAACGTAGTTTCTACAACAAGTAGTATAATTGCCCCGGCGTCAATTACTGGCCCTGATGATAAAAAATATCGTATCTTATATCAAAATCAAAGAATACGTAAGGAAAGCTTAGAACATTCCCCTGATATGATTTATAAAGGTGTTGAAGTTGAAAAGCCATGGATATGCAAAAATTGTAATAGAgattataaatggaaaaatagtttaaaatgtcatttaaaaaatgaatgtgGCCAACCGCCTAgatatttctgtaaaaaaatgtGCGGTTATCGTACAAATGTCCATAGTAATTTAAAACGTCATatgaatacaaaatgtaaagatGATGATAAAGAAGgataTTCGAAGCGTACTACAGACCATGAGTTAGTTGAAGAAGAGAGTATTGACCCGAAACTGGAACAAACAGAAACTTCACGTGATTTTTTAGATCGATCTAAGCAAAGAAGGAAAATATGTGACATTGATTATGATGACCacgatgatggtgatgatgataatTATGATGATGGTGACGATgataatgatattgaaaattttgagagTGACGGTAATAAAAATGATAGACTACAACAAAAAAGCTGTGATAGTAATAAAACATCTTCATCTTCATCACCAATGCCTCAACCACTTAACTTACAAGTAATAAAAGGTTTGGTTGATTCTATACAAGGATTAACAAGTACTGTGGCATCATCATCAATGCTACGCAGCGGTACTGCAAACACTAGTGTTGGTGATAGTTGTTTAGACAAAAATATACCATTTCAATCACAATTAAGTCATTCACAGCCAATAAAATCGCCCATCATaaagcaacaacagcaacatcCAGTTTCTAGTTTAGAACATGTACGGCATGGATCCATTGACTCAGATCGTAGAATTTGTACAGGAGATACACTAGAAAGCAGTTCGGTATCGCAAGTTACTACTGGTAGTGGTATGTTGATTGGGGCAGCATTATCACCGTCTGCAGGAGCTTCAATATCACTTATAAGTCCCAGTTTGCATagtcaacaacaacagcagcaacagcagCCGCAGCAACATGaactttttaaaacattttcagccTTACAATTTCCTTTTGATTTAACAACAATGATTAAAACGGAAGATCAACAACGACTCCATCCATTTGTGGGGGGTACAAGTGCTAGTGGACCTAGCGGTTCTATTAGTTATGCCACCACTGGAACAAGTAGCGGTAATTTACCAAATGCTGGCAATAATGAAATTACAATTATGTCTGGCGCAAGATGTAGTCCTATTTTATCTGGTAACGTTAGCAGTAATATAGGACAGAATAGTGGAATAAGTGGAGAGCCAGGTTGTAGTGGAAATACTAGTGGAAGTTTAATACCTCAACCAGGTACCTCAATGGGAGGTGGCAGTGGTTGGGGAGCTTTCACCTGTAAAAAGTGTGGTAACACATATGCAAGGCCACATAGCTTAAATAGACATTTAAGATTTGAATGCGGTGTTGAGCCAAAATTTGAATGTCCAATATATTCTGAATGTGATGAACCAAAAACAATGTACATGAAAGACGGTACACTTAGATATATATGCCCAAGATGCGgtgttaagtataaaaaaatcacAGCAGTTCGGGGTCATATGCGAGAATGTGGTTTGGGAGCTCAATGTCCTTTTTGCCCGAAAATTGTAACACAGAGAAGAAATTTGCCCAAACATATTGAAAGGCACCAAAAAAATGTATCAAACTTTCcatcattgaaaatattaagtgtAGAAACATTaaGCAATAGTATATGGACTTTAGTTGAAGCTTTACCAACCTCAACAGCAATCGTAACGCCGCAAGCTACGCATACGGTTTTGTTACAAATTCCAGCGTCAGTGGCTGCTAGTGCTGGCCTGCAAAACAATATTCAATTACAGACGTTAATACCCGCAGTGACAGCTGCAACAACAGGAACAACTTTAACAACTCAATCAATTAAGCATGATaaagatataaaaacaaattatacagTACAAGAAATTCATACAATTGAAGCAATTGAGGAAATTTCATCCCATCAATTACACGAGTTACAGACTCATGAACAGCAGCATTTACAGCAACAGCATCGTCAATCGCAGCAACCTCAAAATGATCATTTACAACTACCACAACAACACATCAAATCACATACTGCAACAGCTTCTACAACTACACAATTAGCTGATGATGATGGACTTTATGAAGATATTCCTCATTTGGAGCAAGAATCTATTATGTCTGATGAATATAacaaagaaactataaaaaccGTACAAATATCTTCGCATCAACACCAAAAGCAGCAGCATCAGCCACATAAATCGATAACAACAAAAGGGAAAATTGTGATTACAAATCCAAAGGCATCAActgttaaacaatttaaaataccaaCAACGCCACTTCAAATACAACATCAAAAGCACTCACTTCAACAATCACCCCAAACCCAACAACAGCAACATCAACCGCAATCACAACAATTTTCGacaaatcaaaaactaaaatatgagAAATCTGATATAAAACCTAATACTAAGGAAATAACAATAACATCAATATCGGGTGGTGTGAAAATGAAATCGGAGTTACCATTTGTTTGTGATCAGTGTGattTATCATCATATTCACCTAAATCTGGGCCTAAACCTTCTATGAGAAGTGGTATATGTACACGTTCctcaacaaatttttcaactGAAGACAGTAACTCTTCCAGTAAACCTGTAATTCGCTTAGTTCCTGAGGAGAATCTCTTGAGACCTGATCACGTTATCAAACGAGAAAGTTCTGATTCAGATTCTGGGTCCCCATCAACAAGTCCATCCCCGCCATTGATTTCTGCAAGCTTAACTTCgggaaattttaaacaaagtcAAAATATACCTACAAATTCTTCCTCAATCGGATCACCATTATCTGGAACAGGATCAACAACAACATCTAAAAATACTAATCAAAAACAATTGCTGAATGATGATACCGCAGTAATAAAAGATAAAGCAGCCATAAAAGTTGCCTTAAGACAATTAGCTTCAATATCTTCACCTAAAACTTTAgaaggaattttattaaaatgtagaaaTCCAAATTTAAGTAACTTAACAACTGCTATTACTGGAAATGTTCCTGCTACTACACCGCCACCATCTACATCAAGCTGCTGCGGGAGTAATGCTGTACATGTTGCGGGTTGTGTTGGTTCTGTTAGTGGCAACATAGCTCCGAAAAAACCGGGTACAAGAACATACGATGGGAGTGGTAGTGTTTTGTGTGGAATTGGCGCGGGAAATGCTTCAAAACCAGGTGGAACGCGATTATATGAAGTTAATCGATGCCCTTTATGTTCAAGAAATTATCGTTCACAGGCATTTTTAAATGAACACATGCGTAAAGAACATTCAATATTGATAtaa
- Protein Sequence
- MRNNNENHFYHNQEDNNYKEDEEHGMRDGLEILRTDSIGENKKDENWKRKFRYEQLEELELKTHICPNCEKSYAYKKNLNRHLKYECVKHDKSEQTDITTDEFELDDCLLESNDIVITQNKDGFVLHVKKLGNVTSSKLATTDEENQDQQEQHQSQHLQHHQQHHQDQSHSHQQQHVLHQHHQQQQQQQQQQQQQHQQQQHHHHQQLHHHLQLATPTNVVAVPGVHQLASDDNQGKTLTSLHPIKLPSAECELINLKKIQPTTSAIATTAIIPPQHLQEHHTNIVTTNSQTLNTILGIREVNIQQKNLGSRIKYRGKYSTSPIQDADGTVQLLATISPKQEIGPTTTTVMAGEKKFEIAEITDLNTPQASIISDLVKYAEIDDIELPDGTKIGIGYAPTEISEHHIQTAQAVQQVQQVTDSPSHEIIQHDRNSGSGQETTITKSYTILTTTPIKQTQPSQQHQQQVTTQHQIQQHQAQQQMQIQQPQQQQQQHTTTTTTTTYELSLSDSSLTQSEDNEKLYVCRHCGKKYRWKSTLRRHENVECGGKEPCHPCPYCTYKAKQRGNLGVHVRKHHPEKPQLESIRGPEDLSITRIAGLTWNEWNARLAMPLVTQLREGPHSLFPTDLSLKWGQQNTSEQNSSSSAASSVHERKSPALLFSPPNGSSTPGGGIITTNNRGERVTRSERTNVELEKQSQDKEHNKNNRDSETQSRQQKSERELRSSKSANINADTTTSLIVNAHANINNTGYNNNSNNNNNNNNNNNNNKSNNNNNNDNSNDNINNNNNNNNNNNNNNNNNINNNDDNKNNNNNNNNSNNNKNNIDKNDKDNKKNNNDTGGIDIDCDYKPLALEKFNNSNSNSLNVNNSEQQQATSGLVRLSLFNALSSSLSAAAAANLSVNSGNNSLNSGSNNNGNYSGEGGHPCPECGRVYKLKSSLRNHQKWECGKEPQFQCPFCVYRAKQKMHIGRHMERMHKEKFSNLDYKVKEEAIEAAVAAASAANFTLPKLIPNSTILTNNDEEIAVTNDSNETDIVIKIERNSPSPAASLLLNNLSDFSCDFDEDDEESGSEEFDGSTPSEFNYDIKLSSPVSWAFQPVKIENLDEDYDNIPIINQPIHLPTTIQTQDQNSQTIISSAVTNGGLASAVAAIANQSIASIKKSTTTLVPIKQNSQQSKINTSEQLLKIFSSAALTTATTKLSNSNNDLPILAGNTSSTLVTILPTLPNTTIAKKDSITNQIIPKGTSIRLVQQLDSPSVTPIINNNLLSSSSTTTVSSTNNNTNVVSTTSSIIAPASITGPDDKKYRILYQNQRIRKESLEHSPDMIYKGVEVEKPWICKNCNRDYKWKNSLKCHLKNECGQPPRYFCKKMCGYRTNVHSNLKRHMNTKCKDDDKEGYSKRTTDHELVEEESIDPKLEQTETSRDFLDRSKQRRKICDIDYDDHDDGDDDNYDDGDDDNDIENFESDGNKNDRLQQKSCDSNKTSSSSSPMPQPLNLQVIKGLVDSIQGLTSTVASSSMLRSGTANTSVGDSCLDKNIPFQSQLSHSQPIKSPIIKQQQQHPVSSLEHVRHGSIDSDRRICTGDTLESSSVSQVTTGSGMLIGAALSPSAGASISLISPSLHSQQQQQQQQPQQHELFKTFSALQFPFDLTTMIKTEDQQRLHPFVGGTSASGPSGSISYATTGTSSGNLPNAGNNEITIMSGARCSPILSGNVSSNIGQNSGISGEPGCSGNTSGSLIPQPGTSMGGGSGWGAFTCKKCGNTYARPHSLNRHLRFECGVEPKFECPIYSECDEPKTMYMKDGTLRYICPRCGVKYKKITAVRGHMRECGLGAQCPFCPKIVTQRRNLPKHIERHQKNVSNFPSLKILSVETLSNSIWTLVEALPTSTAIVTPQATHTVLLQIPASVAASAGLQNNIQLQTLIPAVTAATTGTTLTTQSIKHDKDIKTNYTVQEIHTIEAIEEISSHQLHELQTHEQQHLQQQHRQSQQPQNDHLQLPQQHIKSHTATASTTTQLADDDGLYEDIPHLEQESIMSDEYNKETIKTVQISSHQHQKQQHQPHKSITTKGKIVITNPKASTVKQFKIPTTPLQIQHQKHSLQQSPQTQQQQHQPQSQQFSTNQKLKYEKSDIKPNTKEITITSISGGVKMKSELPFVCDQCDLSSYSPKSGPKPSMRSGICTRSSTNFSTEDSNSSSKPVIRLVPEENLLRPDHVIKRESSDSDSGSPSTSPSPPLISASLTSGNFKQSQNIPTNSSSIGSPLSGTGSTTTSKNTNQKQLLNDDTAVIKDKAAIKVALRQLASISSPKTLEGILLKCRNPNLSNLTTAITGNVPATTPPPSTSSCCGSNAVHVAGCVGSVSGNIAPKKPGTRTYDGSGSVLCGIGAGNASKPGGTRLYEVNRCPLCSRNYRSQAFLNEHMRKEHSILI
Similar Transcription Factors
Sequence clustering based on sequence similarity using MMseqs2
- 100% Identity
- -
- 90% Identity
- -
- 80% Identity
- -